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Report for Sequence Feature Glyma18g38086

Feature Type:gene_model
Chromosome:Gm18
Start:45398275
stop:45400653
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38086
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01400AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:151920-152987 FORWARD LENGTH=355 SoyBaseE_val: 3.00E-25ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR23315Panther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING JGI ISS
PTHR23315:SF35Panther ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN JGI ISS
UniRef100_I1K860UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K860_SOYBN SoyBaseE_val: 9.00E-32ISS
UniRef100_Q9SGH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Armadillo/beta-catenin-like repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9SGH8_ARATH SoyBaseE_val: 2.00E-22ISS

Expression Patterns of Glyma18g38086
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38086 not represented in the dataset
Glyma18g38086 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38086 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g173000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38086
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38086
>Glyma18g38086.1   sequence type=CDS   gene model=Glyma18g38086   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCAAAGGAGAACACGGTGTGCGCATTGGTTCGGTTATCGAAAAACAAGGAGGAAGATAAGGTGATGATAGGGAGGGTGGGAGCGATTCTGCATCTACTGAAGCTTCTAGAAGGAGGGGGATTGCACGGGAAGAAGAACTCGGTGACTGTGCGGTACGCGCTATGTTCGACGACGAAGGAGAATAAGGTGAAGGCGGTGAGCACGGGGGTTATGAGGGCACTGGTGGAGCTGATGGTGGACTTGGGGTTGAGTATGGAGGACCTGGGGTTGAGTATGGTGTACTTGGTGAGCGTGGTGGTGGCGGTGGCGGAGGCGAAAGGGATTTATGATTTCCAACTACAAGCCCTTGTTGCCGAAGTTCGTGATCTTAGGGACAGAGAGCACTCTGCCACCGAGCAACACCACCTTCTAGTCCAGGTTTTCGACTCCCTTCAATTAGGTCAAGTTTCTTCGTCGCGTAGCGTAGTGCTTTTTGTATTTTCTTGTTGGTTTAGTTTGCCACGTTTGAGAGTAGAAGCTGAAGCGGAACGATGA
Predicted protein sequences of Glyma18g38086
>Glyma18g38086.1   sequence type=predicted peptide   gene model=Glyma18g38086   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMAKENTVCALVRLSKNKEEDKVMIGRVGAILHLLKLLEGGGLHGKKNSVTVRYALCSTTKENKVKAVSTGVMRALVELMVDLGLSMEDLGLSMVYLVSVVVAVAEAKGIYDFQLQALVAEVRDLRDREHSATEQHHLLVQVFDSLQLGQVSSSRSVVLFVFSCWFSLPRLRVEAEAER*






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