SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48850 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306 | SoyBase | E_val: 2.00E-137 | ISS |
| GO:0006792 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of sulfur utilization | SoyBase | N/A | ISS |
| GO:0010438 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to sulfur starvation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PTHR23083:SF200 | Panther | OS05G0506000 PROTEIN | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7L2A9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Male sterility 5 family protein n=1 Tax=Medicago truncatula RepID=G7L2A9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EE35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EE35 related cluster n=1 Tax=unknown RepID=UPI000233EE35 | SoyBase | E_val: 0 | ISS |
|
Glyma18g38050 not represented in the dataset |
Glyma18g38050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g47060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g172600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g38050.2 sequence type=transcript gene model=Glyma18g38050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCCACATTAGCCCAACACCGAAAGAAAAGGAATGAGGACGCACACCCGTCCAGGTTCACAATGTTGTTGTTGTTCATCTTCTTCTCATCCTTTGTTCCTCCTTTCACAACTCCAAAGTTGAAACTCGAAAGCGCGTAATATTAATAATCGTAACAAACAAGAGAGAGAACAGAACTACTACTGTTTCTTTTTTTGCCTTTGTTTCTCTGCCCCTTTGTGCAGCGTCTCACACACCAATGGAAGAACCAAGTGGTTGCAACAAGAGCGCTCCAAAAGGAAAAAAGGATGACCTTTACCATGTACTTCACAAGGTCCCTTATGGAGATAGCCCTTATGTCAGAGCTAAGCATGCCCAGCTGGTAGAAAAGGACCCGGAAGCTGCAATTGTATTATTTTGGAAAGCAATAAATTCTGGGGATAAAGTGGACAGTGCTCTAAAGGATATGGCAGTAGTGATGAAGCAATTGGACAGATCTGATGAAGCCATTGAAGCCATTCGTTCATTTAGAAGCCTTTGCTCCAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGAAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGTTGATCTACCAAGGTGAGGCCTTCAATGGGAAACTCACCAAGACAGCAAGGTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAACAAGAAACTTCAAGATTACTGGGAAACCTGGGCTGGGCCTATATGCAAAAGATGAACTACATGATGGCTGAGGTGGTGTATCGGAAAGCCCAAATAATTGATCCGGATTGTAACAAGGCCTGTAACTTGGGCCTGTGCCTCATCAGACAAGCCAGATATGAAGAGGCACAATTGGTTCTTGAAGATGTATTAAAAGGAAATCTTCCCGGCTCAGATGATAGCAAGGCAAGGAAACGGGCCCAAGATCTCCGAACAGAGTTGAGATCCATGCTACCGCCACCACATTTCTCAGATCTTTTGGGCCTAGATGATGAGTTCATCAAAGGACTGGAACAATTGATGAATGAATGGGGCCCAATTAGATCAAAGAGACTTCCAATTTTTGAGGAGATTTCTTCATTTAGAGATCAATTAGCATGTTAAGTTCATACTTTGTGTATATAGCTTTCATACATTGGGTTGGGTAATAGGTGTTTATGAAGAACTAGCTTCTTTTTGTTTTCTTTTTCCTATTTTTGATGAAGTGGTGGGTGTTGCTTTTTTTGTAAGAGTGAGGAATTAAATAGAGTGAAGAACTTGATGTAAATTAATTATGAAAACAAAGTAATAAGCCTAGTATTTTATAAACTCCAATAAGAAGTTATTGCAAGTCTTCTTTTAGTTTAGGTTTATTTAGAAGCAAAGATGAAATGGTTGCCACATAAATAAATTGGTTTACGAACATATTGTTA
>Glyma18g38050.1 sequence type=CDS gene model=Glyma18g38050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTAGTGATGAAGCAATTGGACAGATCTGATGAAGCCATTGAAGCCATTCGTTCATTTAGAAGCCTTTGCTCCAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGAAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGTTGATCTACCAAGGTGAGGCCTTCAATGGGAAACTCACCAAGACAGCAAGGTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAACAAGAAACTTCAAGATTACTGGGAAACCTGGGCTGGGCCTATATGCAAAAGATGAACTACATGATGGCTGAGGTGGTGTATCGGAAAGCCCAAATAATTGATCCGGATTGTAACAAGGCCTGTAACTTGGGCCTGTGCCTCATCAGACAAGCCAGATATGAAGAGGCACAATTGGTTCTTGAAGATGTATTAAAAGGAAATCTTCCCGGCTCAGATGATAGCAAGGCAAGGAAACGGGCCCAAGATCTCCGAACAGAGTTGAGATCCATGCTACCGCCACCACATTTCTCAGATCTTTTGGGCCTAGATGATGAGTTCATCAAAGGACTGGAACAATTGATGAATGAATGGGGCCCAATTAGATCAAAGAGACTTCCAATTTTTGAGGAGATTTCTTCATTTAGAGATCAATTAGCATGTTAA >Glyma18g38050.2 sequence type=CDS gene model=Glyma18g38050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAACCAAGTGGTTGCAACAAGAGCGCTCCAAAAGGAAAAAAGGATGACCTTTACCATGTACTTCACAAGGTCCCTTATGGAGATAGCCCTTATGTCAGAGCTAAGCATGCCCAGCTGGTAGAAAAGGACCCGGAAGCTGCAATTGTATTATTTTGGAAAGCAATAAATTCTGGGGATAAAGTGGACAGTGCTCTAAAGGATATGGCAGTAGTGATGAAGCAATTGGACAGATCTGATGAAGCCATTGAAGCCATTCGTTCATTTAGAAGCCTTTGCTCCAAACAATCCCAAGAGTCCCTTGATAATGTACTAATAGATCTTTATAAGAAATGTGGAAAAATAGATGAGCAAATAGAAATGCTGAAGCGAAAGTTGAAGTTGATCTACCAAGGTGAGGCCTTCAATGGGAAACTCACCAAGACAGCAAGGTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAACAAGAAACTTCAAGATTACTGGGAAACCTGGGCTGGGCCTATATGCAAAAGATGAACTACATGATGGCTGAGGTGGTGTATCGGAAAGCCCAAATAATTGATCCGGATTGTAACAAGGCCTGTAACTTGGGCCTGTGCCTCATCAGACAAGCCAGATATGAAGAGGCACAATTGGTTCTTGAAGATGTATTAAAAGGAAATCTTCCCGGCTCAGATGATAGCAAGGCAAGGAAACGGGCCCAAGATCTCCGAACAGAGTTGAGATCCATGCTACCGCCACCACATTTCTCAGATCTTTTGGGCCTAGATGATGAGTTCATCAAAGGACTGGAACAATTGATGAATGAATGGGGCCCAATTAGATCAAAGAGACTTCCAATTTTTGAGGAGATTTCTTCATTTAGAGATCAATTAGCATGTTAA
>Glyma18g38050.1 sequence type=predicted peptide gene model=Glyma18g38050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVVMKQLDRSDEAIEAIRSFRSLCSKQSQESLDNVLIDLYKKCGKIDEQIEMLKRKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYMMAEVVYRKAQIIDPDCNKACNLGLCLIRQARYEEAQLVLEDVLKGNLPGSDDSKARKRAQDLRTELRSMLPPPHFSDLLGLDDEFIKGLEQLMNEWGPIRSKRLPIFEEISSFRDQLAC* >Glyma18g38050.2 sequence type=predicted peptide gene model=Glyma18g38050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEPSGCNKSAPKGKKDDLYHVLHKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINSGDKVDSALKDMAVVMKQLDRSDEAIEAIRSFRSLCSKQSQESLDNVLIDLYKKCGKIDEQIEMLKRKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYMMAEVVYRKAQIIDPDCNKACNLGLCLIRQARYEEAQLVLEDVLKGNLPGSDDSKARKRAQDLRTELRSMLPPPHFSDLLGLDDEFIKGLEQLMNEWGPIRSKRLPIFEEISSFRDQLAC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
