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Report for Sequence Feature Glyma18g38038

Feature Type:gene_model
Chromosome:Gm18
Start:45266328
stop:45272231
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38038
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48840AT Annotation by Michelle Graham. TAIR10: homolog of bacterial PANC | chr5:19803823-19805041 REVERSE LENGTH=310 SoyBaseE_val: 4.00E-155ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0015940GO-bp Annotation by Michelle Graham. GO Biological Process: pantothenate biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004592GO-mf Annotation by Michelle Graham. GO Molecular Function: pantoate-beta-alanine ligase activity SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG3042 KOG Panthothenate synthetase JGI ISS
PTHR21299Panther CYTIDYLATE KINASE JGI ISS
PTHR21299:SF1Panther PANTOATE-BETA-ALANINE LIGASE JGI ISS
PF02569PFAM Pantoate-beta-alanine ligase JGI ISS
UniRef100_O24035UniRef Annotation by Michelle Graham. Best UniRef hit: Pantoate--beta-alanine ligase n=1 Tax=Lotus japonicus RepID=PANC_LOTJA SoyBaseE_val: 2.00E-180ISS
UniRef100_O24035UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pantoate--beta-alanine ligase n=1 Tax=Lotus japonicus RepID=PANC_LOTJA SoyBaseE_val: 2.00E-180ISS

Expression Patterns of Glyma18g38038
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38038 not represented in the dataset
Glyma18g38038 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38038
ParalogEvidenceComments
Glyma08g47051 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38038 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g172500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38038
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38038
>Glyma18g38038.1   sequence type=CDS   gene model=Glyma18g38038   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAGCCCCAAGGGTGATCTCCGACAAGGCCTCGATGCGGAGCTGGTCGCGCTCGATGCGGGCCCAGGGCAAGCTCATTGGGCTGGTCCCCACCATGGGCTTCCTCCACGCGGGCCACCTCTCGCTCGTGGCCCAGGCCCGCCAACTCTCCGACGTCGTCGCCGTCTCCATCTACGTCAACCCGGGCCAATTCGCCCCCACGGAGGACCTCTCCACCTACCCCTCCGACTTCGACGGCGACGTAAAGAAACTCGCGTCCGTTCCCGGCGGCGTCGACGTCGTTTTCCATCCCCGTAACTTGTACGATTACGGGAAGAACGGTGGTGGTGACGTGGCAGAGGCTGGTGGAATGGTGTCGTGCGTTGAGAGTGGGTCCGGGCACGAAAGTTGGGTGAGGGTTGAGAAGCTGGAATTGGGGCTGTGTGGGAAGAGCAGGCCCGTTTTCTTCAGAGGGGTGGCGACTGTGGTGACGAAGTTGTTTAATATTGTGGAGCCAGATGTGGCTGTGTTCGGTAAGAAGGATTATCAGCAGTGGCGGCTTATTCAGAGGATGGTTCGAGATCTTGATTTTTCCATAAAAGTGATAGGTGCTGAAATAACACGTGATAATGATGGCCTGGCAATGAGTTCACGTAATGTGCACCTTTCACCTGAAGAGAGGGAAAAGGCACTATCAATAAATAAATCATTGTTAAGAGCTAAATCAGCAGCAGGAGATGGTCAGGTGCATTGTGAGAAGTTGACAAATTTGGTCATCCAAAGTGTTACTGATGCTGGTGGAAGGATCGATTATGCTGAGATTGTTGATCAAAATAATTTGGAGAAAGTGGAACAGATCAAGAGTCCTGTCGTCTTCTGTGTTGCTGCATGGTTTGGCAAAGTCAGGCTTATAGACAACATGGAAATCAACTTGTCAATGAATGTTTGA
Predicted protein sequences of Glyma18g38038
>Glyma18g38038.1   sequence type=predicted peptide   gene model=Glyma18g38038   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPAPRVISDKASMRSWSRSMRAQGKLIGLVPTMGFLHAGHLSLVAQARQLSDVVAVSIYVNPGQFAPTEDLSTYPSDFDGDVKKLASVPGGVDVVFHPRNLYDYGKNGGGDVAEAGGMVSCVESGSGHESWVRVEKLELGLCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRLIQRMVRDLDFSIKVIGAEITRDNDGLAMSSRNVHLSPEEREKALSINKSLLRAKSAAGDGQVHCEKLTNLVIQSVTDAGGRIDYAEIVDQNNLEKVEQIKSPVVFCVAAWFGKVRLIDNMEINLSMNV*






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