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Report for Sequence Feature Glyma18g38014

Feature Type:gene_model
Chromosome:Gm18
Start:45260373
stop:45263883
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38014
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04760AT Annotation by Michelle Graham. TAIR10: vesicle-associated membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=220 SoyBaseE_val: 3.00E-137ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0859 KOG Synaptobrevin/VAMP-like protein JGI ISS
PTHR21136Panther SNARE PROTEINS JGI ISS
PTHR21136:SF46Panther SUBFAMILY NOT NAMED JGI ISS
PF00957PFAM Synaptobrevin JGI ISS
UniRef100_B9S543UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein, putative n=1 Tax=Ricinus communis RepID=B9S543_RICCO SoyBaseE_val: 5.00E-137ISS
UniRef100_C6TNZ7UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TNZ7_SOYBN SoyBaseE_val: 2.00E-162ISS

Expression Patterns of Glyma18g38014
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38014 not represented in the dataset
Glyma18g38014 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38014
ParalogEvidenceComments
Glyma08g47040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38014 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g172300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38014
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38014
>Glyma18g38014.1   sequence type=CDS   gene model=Glyma18g38014   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACAGCAATCGTTGATCTACAGCTTCGTCGCTCGCGGCACCGTGATCCTAGCGGAGTACACCGAGTTCACCGGAAACTTCACCAGCGTGGCGGCGCAGTGCCTCCAGAAACTCCCTTCCTCCAACAACAAGTTCACTTACAACTGCGATGGCCACACCTTCAACTACCTCGTTGATAACGGATTCACTTACTGTGTGGTTGCTGTTGAGTCTGCTGGACGGCAGATTCCAATTGCTTTCCTCGAACGAATCAAGGAGGATTTTACCAAGAAGTATGCTGGAGGAAAAGCTGCAACAGCGGCTGCTCATAGCCTCAACAGAGAGTTTGGACCTAAGTTGAAGGAGGAGATGCAGTACTGTGTTGATCACCCAGAGGAAATTAGCAAGCTTGCTAAAGTGAAAGCTCAGGTTTCAGAAGTCAAAGGAGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGGGAGAAAATTGAGCTTTTGGTGGATAAAACAGAGAACCTTCGCTCTCAGGCTCAAGATTTCAGGCAGCAGGGAACCAAGATTAGGAGAAAGATGTGGTTCCAAAACATGAAGATAAAGCTAATTGTTCTGGGTATCATAATTGCCTTGATTCTCATTATTGTTCTTTCCGTTTGTGGTGGCTTCAACTGTGGTAAATGA
Predicted protein sequences of Glyma18g38014
>Glyma18g38014.1   sequence type=predicted peptide   gene model=Glyma18g38014   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILIIVLSVCGGFNCGK*






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