Glyma18g37970 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g37970

Feature Type:	gene_model
Chromosome:	Gm18
Start:	45190065
stop:	45195478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g37970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32670	AT	Annotation by Michelle Graham. TAIR10: vesicle-associated membrane protein 725 \| chr2:13857941-13859346 FORWARD LENGTH=285	SoyBase	E_val: 4.00E-94	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0859	KOG	Synaptobrevin/VAMP-like protein	JGI		ISS
PTHR21136	Panther	SNARE PROTEINS	JGI		ISS
PTHR21136:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00957	PFAM	Synaptobrevin	JGI		ISS
UniRef100_G7L1A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein n=1 Tax=Medicago truncatula RepID=G7L1A5_MEDTR	SoyBase	E_val: 1.00E-95	ISS
UniRef100_I1N2B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2B3_SOYBN	SoyBase	E_val: 1.00E-123	ISS

Expression Patterns of Glyma18g37970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g37970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g172100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g37970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g37970

Limit To All Plant Sequences

>Glyma18g37970.4   sequence type=transcript   gene model=Glyma18g37970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATTATTCGTATTCATATTTATATTCTTCATATATTACAATTGCTTATTCCAGAATGGAAGGAAAGAGTCTTATAGTGCCTCCTCCTCTTTGACTTCATCCCTATCTTCCGAATTTTCCTAGTTTTGAAAAATCCTACACACGCTTTTGCTTCCACCTCCTTTCCTCACCTTAAATTAAATTATTGTTCAACAATCAATATCAATATAATTCAATTCCTTCAAATTCCAGATACCAAAAACATATATTCTTTCTCTTTGTTTTCTTGTCTGTGGTATTGTCTCTGAGTTGTTAATTTTGTTTTCTTTCCTTTCTCATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGCGGGGGTTTTCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAGAATTGTTACAACTCGACCCCTTTTTTGTAATTTAATAAATATAGTTGTATAATATAAACATTATAAATTTGTTTATTTGATTGACATCACAACACTACAAAGAAAAATATTTTCTATGGTTAATTTTTACATTTTATGTTGGTTATTAATCGTCGTCGAAATCAACAATATAGAATGTTTGTACTTTCTATTACGGT

Coding sequences of Glyma18g37970

Limit To All Plant Sequences

>Glyma18g37970.3   sequence type=CDS   gene model=Glyma18g37970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAGAATTGTTACAACTCGACCCCTTTTTTGTAATTTAA

>Glyma18g37970.4   sequence type=CDS   gene model=Glyma18g37970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGCGGGGGTTTTCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAG

Predicted protein sequences of Glyma18g37970

Limit To All Plant Sequences

>Glyma18g37970.3   sequence type=predicted peptide   gene model=Glyma18g37970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQQSLIYSFVARGTMILAEHTDFSGNFAEVALQCLQRLPASDNKFTYNADGHTFNYLTYNGFTYCVVAVESVGRQLAMAYLERIMEDFSKRYGGGKATTATAKSLNKEFGSKLKEHMQYCVEHPEEVSKLAKVKAQVSEVQQVMRANIDQVLDRQVKIDVLVGQTEDLRNQGAGRPDKEKDVVSKHEDKVNSTCHRDCHHFNNCLIGHLELLQLDPFFVI*

>Glyma18g37970.4   sequence type=predicted peptide   gene model=Glyma18g37970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQQSLIYSFVARGTMILAEHTDFSGNFAEVALQCLQRLPASDNKFTYNADGHTFNYLTYNGFTYCVVAVESVGRQLAMAYLERIMEDFSKRYGGGKATTATAKSLNKEFGSKLKEHMQYCVEHPEEVSKLAKVKAQVSEVQQVMRANIDQVLDRQVKIDVLVGQTEDLRNQAGVFRERGDQIRRKMWYQNMKIKLIVLAIVIAIILIIVLLVT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain