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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma18g37620

Feature Type:gene_model
Chromosome:Gm18
Start:44872798
stop:44873526
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g37620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74410AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:27965723-27967681 FORWARD LENGTH=223 SoyBaseE_val: 5.00E-21ISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7K8K3UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger family protein n=1 Tax=Medicago truncatula RepID=G7K8K3_MEDTR SoyBaseE_val: 3.00E-49ISS
UniRef100_I1N2A8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N2A8_SOYBN SoyBaseE_val: 1.00E-82ISS

Expression Patterns of Glyma18g37620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g37620 not represented in the dataset
Glyma18g37620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g37620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g37620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g37620
>Glyma18g37620.2   sequence type=CDS   gene model=Glyma18g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGCCCTATTGAGGAGTTTATTAAATGGAAAGCTATTTATGGAATGGATATGTCCAGCTGTTGCTCAAGCCTATCATTGCCATGTAAGGATAAATATTTACAATGACAATATTGTTAGGGAAATCACAATCGAAGGGGTGACTTGGAATATCATTCAAAAGCCTCCTGTTCAACAATTCAATTCCAGTAAAATGTTCAAATTATACAATGACTCTTGCTGCTCAATATGCTTCCAGGATTTTGAGGATGAAGAATTTGTGAGGACACTTCCAAAATGTGGCCACTTTTTTCACTTAGTCTGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCCATGTGTAGAATTTATGTTCCAGATTTATGA
Predicted protein sequences of Glyma18g37620
>Glyma18g37620.2   sequence type=predicted peptide   gene model=Glyma18g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VALLRSLLNGKLFMEWICPAVAQAYHCHVRINIYNDNIVREITIEGVTWNIIQKPPVQQFNSSKMFKLYNDSCCSICFQDFEDEEFVRTLPKCGHFFHLVCIDKWLVQQGSCPMCRIYVPDL*






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