Glyma18g36712 - SoyBase

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Report for Sequence Feature Glyma18g36712

Feature Type:	gene_model
Chromosome:	Gm18
Start:	43054681
stop:	43065137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g36712

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24840	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr3:9067301-9070256 FORWARD LENGTH=579	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF5	Panther	SEC14 CYTOSOLIC FACTOR-RELATED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_B9S518	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9S518_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337C62	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337C62 related cluster n=1 Tax=unknown RepID=UPI0002337C62	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g36712

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g36712 not represented in the dataset	Glyma18g36712 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g36712

Paralog	Evidence	Comments
Glyma08g46750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g36712 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g169800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g36712

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g36712

Limit To All Plant Sequences

>Glyma18g36712.2   sequence type=transcript   gene model=Glyma18g36712   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCAACTCCTCTTTCCTTTCTCACGCCCGTATTCTAAATCATCAGCACCCGATCCCTCCTCCATCCCGTCCTTCCGTTAATAAACGGCACTATCAGACTTCCACCAACAGAAAAAACCAAACAGCCGCCGTTAGCGCTAGAGTAGCATTCGCAGAACAGAAGCGGCCGTTGCACGCCACTCCTAACGCTTTTGATAACGACTTGCCTCTCTCTCTTTGTCCCCTCGTTTGTTCCTACGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGCGTGTCTCTGTCTGCGGCTCCGTACGGGTTTCGGTACGAAGAGAGGGGGGCGCCATTTTTCGATCTCACACAGAAAGCGATACCCATTTTGCTCTTTTCCTCTCTCGCTCTTGTTTCGATTAGGAGGCAATCTAGGTGGAAATTACTTGCGTCTTGAATAGAATGCCAGGAGAAGAAGTATTAGCTCAAGAAGATGAGAGGGGTAGATGTTTTGAGCCCGAAATCTCTGAGGATGAGTGGCGGAAGTCTCGAGCTAGATCTCTTAGGAGAAAAGCAATGACTGCTTCAACCAGACTCACTTATAGTCTCAGGAAGCGTAATACACGTGTAGCAGATAGTGACTTTGCTTCAATTTTCATAGAAGATGTCCGTGATGCTAACGAGGAAAAAGCTGTGAATTCATTTCGTCAGGTGCTACTTACAAGAGATCTGCTTCCAGATTCCCATGATGATTATCATAAAATGCTGAGGTTTCTGAAAGCCAGAAAGTTCGACATTGATAAAACAGTCCAGATGTGGGCAGATATGCTCCATTGGAGGAAGGAGTATGGAGTAGATTGTATTTTACAGGACTTCGTATATAAGGAGTATGAAGAGGTACAATGCTATTATCCTCATGGTTACCATGGTGTGGACAAAGAGGGCCGGCCGGTTTATATTGAAAGACTTGGCAAAGTTGAACCCAGCAAATTGATGAATGTCACGACAGTAGATCGATTTTTAAAATATCATGTTCAGGGATTTGAGAAAATGTTTAAAGAGAAATTCCCAGCATGTTCTATTGCAGCGAAGAGGCATATAGATAAAACAACAACAATACTTGATGTGCATGGAGTGAATTGGGTGAGCTTTAGCAAAGTTGCACATGATCTTGTTATGCGCATGCAAAAAATTGATGGTGATAACTACCCTGAGACATTAAACCAGATGTTCATTGTTAATGCTGGTAGTGGGTTCAAGCTACTATGGAATACTGCAAAAGGTTTTCTTGATCCAAGGACCACAGCCAAAATACATGTTTTAGGCAACAAGTTTCAGAGCAGACTGTTAGAGATTATTGACTCAAGCCAACTTCCAGATTTCCTCGGCGGCAGTTGTTCGTGCCCAAATGATGGAGGGTGTCTTAGATCTAATAAGGGACCTTGGAATGATCCTGACATTTTGAAACTGTTGCATTCTAGGGAAGCAATGAAGCTAACAAAGTTTGGAAGTTCTTCTGTTGCTGATGTGGTAGATGTGAAGTCATACGCCAGCAAGGTTACAAGCACTGAAATATCTGAACCTCTATCAGCGTCAGCAAAAAGGATGAGAGACTCTGCACCTACCGGCAACGAACTTGAGCCTGTAAATGCTGCCAGAGAAGTTGTTGGGGATGTTGATTCAACAAGTGATTCAAGCAATAATTATCTCAGAAGACTACTGGAGAAGCCAATTCCATATATCACAAGTATTTTGGCTCAAATCACAGTCAAATTGTTAACTTGTATTTATTTAGTATTTGTGGCATTGGGGAAATTTTTTGTGGTTCACTCTGTAGACAACCAACCAAGAAGCCATGGGCAAACAGAATCGGCACAATCCAATTCACAGGAACAATTAATAACTCCGGCAATAAAAGAGCCTCTTTGGCAAAGATTGCAGAATTTAGAGGCAGTGGTATCTGAGATGGCCAATAAACCTAAAACAATTCCTCCTGAAAAAGAGGATATTCTTCAAGAGTCATTGAGTCGTATAAAATGTATAGAATATGACTTGCAAAAAACAAAGAAGGCCCTGCTAGCAACTGCTTCAAAGCAAGTTGAGCTTGCCAAGTCATTGGAAAGCCTAAAGGATAGTAAATTTGACGGAACAAACTCATGTTGGCCTAAAAATAGAAGTTATGCCCCAGGACGATGAGCATCCCTCTTTTCAGCATCAGTTTGCAGTCTATTGTTTTTGATACTCTACAGCTGAATTACTACCAGAGCTAAAAAACTTCTATTGGCTTATTTAAAGGAATTACTCTCATTCTCATAGGCTTGAGGAATGGGCTATGGGAAGTGCATAGCCCCAATGTATAGAAGGCAACAATAATTTTTTATGAAGATTCTGGACTCCAAATATTCCTTTTAAATGTATAACTGTGTTAACCACATTTATTTTCTTATTGGCTTTTCTGTACAGAGGACATATATACAAAGTATGCTACTCAAATTCAGATGTATTTTAATACCAGTTGCATATATGCCGAAAAGACATTTTCTGTAATACATTGTAACAAATAGCGAGCGCTTAATAGTAAATTTTGGATTTTACTAGAGGACGTGCTCTCTCCTGAAATTTAGTTTTGGATTATTTTATTACTCTAGTTTTTAGAGAAATTACTATTTGTGGACTTTATAATATGAAGTGTCAACATGCATGTTATTAAGCCA

Coding sequences of Glyma18g36712

Limit To All Plant Sequences

>Glyma18g36712.1   sequence type=CDS   gene model=Glyma18g36712   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGGAGAAGAAGTATTAGCTCAAGAAGATGAGAGGGGTAGATGTTTTGAGCCCGAAATCTCTGAGGATGAGTGGCGGAAGTCTCGAGCTAGATCTCTTAGGAGAAAAGCAATGACTGCTTCAACCAGACTCACTTATAGTCTCAGGAAGCGTAATACACGTGTAGCAGATAGTGACTTTGCTTCAATTTTCATAGAAGATGTCCGTGATGCTAACGAGGAAAAAGCTGTGAATTCATTTCGTCAGGTGCTACTTACAAGAGATCTGCTTCCAGATTCCCATGATGATTATCATAAAATGCTGAGGTTTCTGAAAGCCAGAAAGTTCGACATTGATAAAACAGTCCAGATGTGGGCAGATATGCTCCATTGGAGGAAGGAGTATGGAGTAGATTGTATTTTACAGGACTTCGTATATAAGGAGTATGAAGAGGTACAATGCTATTATCCTCATGGTTACCATGGTGTGGACAAAGAGGGCCGGCCGGTTTATATTGAAAGACTTGGCAAAGTTGAACCCAGCAAATTGATGAATGTCACGACAGTAGATCGATTTTTAAAATATCATGTTCAGGGATTTGAGAAAATGTTTAAAGAGAAATTCCCAGCATGTTCTATTGCAGCGAAGAGGCATATAGATAAAACAACAACAATACTTGATGTGCATGGAGTGAATTGGGTGAGCTTTAGCAAAGTTGCACATGATCTTGTTATGCGCATGCAAAAAATTGATGGTGATAACTACCCTGAGACATTAAACCAGATGTTCATTGTTAATGCTGGTAGTGGGTTCAAGCTACTATGGAATACTGCAAAAGGTTTTCTTGATCCAAGGACCACAGCCAAAATACATGTTTTAGGCAACAAGTTTCAGAGCAGACTGTTAGAGATTATTGACTCAAGCCAACTTCCAGATTTCCTCGGCGGCAGTTGTTCGTGCCCAAATGATGGAGGGTGTCTTAGATCTAATAAGGGACCTTGGAATGATCCTGACATTTTGAAACTGTTGCATTCTAGGGAAGCAATGAAGCTAACAAAGTTTGGAAGTTCTTCTGTTGCTGATGTGGTAGATGTGAAGTCATACGCCAGCAAGGTTACAAGCACTGAAATATCTGAACCTCTATCAGCGTCAGCAGTAAGATTGCATCCTTCAGCCTTCGTACAATCTGTTCCTTCTAGTGAAAAAAAAAGGATGAGAGACTCTGCACCTACCGGCAACGAACTTGAGCCTGTAAATGCTGCCAGAGAAGTTGTTGGGGATGTTGATTCAACAAGTGATTCAAGCAATAATTATCTCAGAAGACTACTGGAGAAGCCAATTCCATATATCACAAGTATTTTGGCTCAAATCACAGTCAAATTGTTAACTTGTATTTATTTAGTATTTGTGGCATTGGGGAAATTTTTTGTGGTTCACTCTGTAGACAACCAACCAAGAAGCCATGGGCAAACAGAATCGGCACAATCCAATTCACAGGAACAATTAATAACTCCGGCAATAAAAGAGCCTCTTTGGCAAAGATTGCAGAATTTAGAGGCAGTGGTATCTGAGATGGCCAATAAACCTAAAACAATTCCTCCTGAAAAAGAGGATATTCTTCAAGAGTCATTGAGTCGTATAAAATGTATAGAATATGACTTGCAAAAAACAAAGAAGGCCCTGCTAGCAACTGCTTCAAAGCAAGTTGAGCTTGCCAAGTCATTGGAAAGCCTAAAGGATAGTAAATTTGACGGAACAAACTCATGTTGGCCTAAAAATAGAAGTTATGCCCCAGGACGATGA

>Glyma18g36712.2   sequence type=CDS   gene model=Glyma18g36712   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGGAGAAGAAGTATTAGCTCAAGAAGATGAGAGGGGTAGATGTTTTGAGCCCGAAATCTCTGAGGATGAGTGGCGGAAGTCTCGAGCTAGATCTCTTAGGAGAAAAGCAATGACTGCTTCAACCAGACTCACTTATAGTCTCAGGAAGCGTAATACACGTGTAGCAGATAGTGACTTTGCTTCAATTTTCATAGAAGATGTCCGTGATGCTAACGAGGAAAAAGCTGTGAATTCATTTCGTCAGGTGCTACTTACAAGAGATCTGCTTCCAGATTCCCATGATGATTATCATAAAATGCTGAGGTTTCTGAAAGCCAGAAAGTTCGACATTGATAAAACAGTCCAGATGTGGGCAGATATGCTCCATTGGAGGAAGGAGTATGGAGTAGATTGTATTTTACAGGACTTCGTATATAAGGAGTATGAAGAGGTACAATGCTATTATCCTCATGGTTACCATGGTGTGGACAAAGAGGGCCGGCCGGTTTATATTGAAAGACTTGGCAAAGTTGAACCCAGCAAATTGATGAATGTCACGACAGTAGATCGATTTTTAAAATATCATGTTCAGGGATTTGAGAAAATGTTTAAAGAGAAATTCCCAGCATGTTCTATTGCAGCGAAGAGGCATATAGATAAAACAACAACAATACTTGATGTGCATGGAGTGAATTGGGTGAGCTTTAGCAAAGTTGCACATGATCTTGTTATGCGCATGCAAAAAATTGATGGTGATAACTACCCTGAGACATTAAACCAGATGTTCATTGTTAATGCTGGTAGTGGGTTCAAGCTACTATGGAATACTGCAAAAGGTTTTCTTGATCCAAGGACCACAGCCAAAATACATGTTTTAGGCAACAAGTTTCAGAGCAGACTGTTAGAGATTATTGACTCAAGCCAACTTCCAGATTTCCTCGGCGGCAGTTGTTCGTGCCCAAATGATGGAGGGTGTCTTAGATCTAATAAGGGACCTTGGAATGATCCTGACATTTTGAAACTGTTGCATTCTAGGGAAGCAATGAAGCTAACAAAGTTTGGAAGTTCTTCTGTTGCTGATGTGGTAGATGTGAAGTCATACGCCAGCAAGGTTACAAGCACTGAAATATCTGAACCTCTATCAGCGTCAGCAAAAAGGATGAGAGACTCTGCACCTACCGGCAACGAACTTGAGCCTGTAAATGCTGCCAGAGAAGTTGTTGGGGATGTTGATTCAACAAGTGATTCAAGCAATAATTATCTCAGAAGACTACTGGAGAAGCCAATTCCATATATCACAAGTATTTTGGCTCAAATCACAGTCAAATTGTTAACTTGTATTTATTTAGTATTTGTGGCATTGGGGAAATTTTTTGTGGTTCACTCTGTAGACAACCAACCAAGAAGCCATGGGCAAACAGAATCGGCACAATCCAATTCACAGGAACAATTAATAACTCCGGCAATAAAAGAGCCTCTTTGGCAAAGATTGCAGAATTTAGAGGCAGTGGTATCTGAGATGGCCAATAAACCTAAAACAATTCCTCCTGAAAAAGAGGATATTCTTCAAGAGTCATTGAGTCGTATAAAATGTATAGAATATGACTTGCAAAAAACAAAGAAGGCCCTGCTAGCAACTGCTTCAAAGCAAGTTGAGCTTGCCAAGTCATTGGAAAGCCTAAAGGATAGTAAATTTGACGGAACAAACTCATGTTGGCCTAAAAATAGAAGTTATGCCCCAGGACGATGA

Predicted protein sequences of Glyma18g36712

Limit To All Plant Sequences

>Glyma18g36712.1   sequence type=predicted peptide   gene model=Glyma18g36712   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGEEVLAQEDERGRCFEPEISEDEWRKSRARSLRRKAMTASTRLTYSLRKRNTRVADSDFASIFIEDVRDANEEKAVNSFRQVLLTRDLLPDSHDDYHKMLRFLKARKFDIDKTVQMWADMLHWRKEYGVDCILQDFVYKEYEEVQCYYPHGYHGVDKEGRPVYIERLGKVEPSKLMNVTTVDRFLKYHVQGFEKMFKEKFPACSIAAKRHIDKTTTILDVHGVNWVSFSKVAHDLVMRMQKIDGDNYPETLNQMFIVNAGSGFKLLWNTAKGFLDPRTTAKIHVLGNKFQSRLLEIIDSSQLPDFLGGSCSCPNDGGCLRSNKGPWNDPDILKLLHSREAMKLTKFGSSSVADVVDVKSYASKVTSTEISEPLSASAVRLHPSAFVQSVPSSEKKRMRDSAPTGNELEPVNAAREVVGDVDSTSDSSNNYLRRLLEKPIPYITSILAQITVKLLTCIYLVFVALGKFFVVHSVDNQPRSHGQTESAQSNSQEQLITPAIKEPLWQRLQNLEAVVSEMANKPKTIPPEKEDILQESLSRIKCIEYDLQKTKKALLATASKQVELAKSLESLKDSKFDGTNSCWPKNRSYAPGR*

>Glyma18g36712.2   sequence type=predicted peptide   gene model=Glyma18g36712   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGEEVLAQEDERGRCFEPEISEDEWRKSRARSLRRKAMTASTRLTYSLRKRNTRVADSDFASIFIEDVRDANEEKAVNSFRQVLLTRDLLPDSHDDYHKMLRFLKARKFDIDKTVQMWADMLHWRKEYGVDCILQDFVYKEYEEVQCYYPHGYHGVDKEGRPVYIERLGKVEPSKLMNVTTVDRFLKYHVQGFEKMFKEKFPACSIAAKRHIDKTTTILDVHGVNWVSFSKVAHDLVMRMQKIDGDNYPETLNQMFIVNAGSGFKLLWNTAKGFLDPRTTAKIHVLGNKFQSRLLEIIDSSQLPDFLGGSCSCPNDGGCLRSNKGPWNDPDILKLLHSREAMKLTKFGSSSVADVVDVKSYASKVTSTEISEPLSASAKRMRDSAPTGNELEPVNAAREVVGDVDSTSDSSNNYLRRLLEKPIPYITSILAQITVKLLTCIYLVFVALGKFFVVHSVDNQPRSHGQTESAQSNSQEQLITPAIKEPLWQRLQNLEAVVSEMANKPKTIPPEKEDILQESLSRIKCIEYDLQKTKKALLATASKQVELAKSLESLKDSKFDGTNSCWPKNRSYAPGR*

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