SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24840 | AT | Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr3:9067301-9070256 FORWARD LENGTH=579 | SoyBase | E_val: 7.00E-64 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| PTHR23324 | Panther | SEC14 RELATED PROTEIN | JGI | ISS | |
| PTHR23324:SF5 | Panther | SEC14 CYTOSOLIC FACTOR-RELATED | JGI | ISS | |
| UniRef100_B9S518 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9S518_RICCO | SoyBase | E_val: 2.00E-90 | ISS |
| UniRef100_I1KZ81 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ81_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma18g36505 not represented in the dataset |
Glyma18g36505 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g36505.1 sequence type=CDS gene model=Glyma18g36505 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCTTGTTATGCGTATGCAAAAAAATTGATGGTGATAACTACCCTGAGGTTTTAGGCAACAAGTTTCAGAGCAGACTGTTACAGATTATAGACACAAGCCAACTTCCAGATTTCCTCGACGGCAGTTGTTCGTGCCCAAATGATGGAGGGTGTCTTAGATCTGATAAGGGACCTTGGAATGATCCTGACATTTTGAAACTATTGCATTCTAGAGAAGCAATGAAGCTAACAAAGTTTGGAAGTCCTTCTGTTGCTGATGGGGTTGATGTGAAGTCATATTCCAGCAAGGTTAAAAGCACTGGAATATCTGAACCTCTATCAGCGTCAGAAGTAAGATTGAATCCTTCAGCCTTCGTACAATCTGTTCCTTCTAGTGAAAAAAAAAGGATGAGAGACTCTGCACCTACCGGCAATGTACTTGAGCCTTTAAATGCTGCCAGAGAAGTTGTTGGGGATGTTGATTCAATAAGTGATTCAAACAACAATTATCTCAGAAGATTACAGGAGAAGCCAATTCCATATATTATAAGTATTTTGGCTCAAATCGCAGTCAAATTGTTAACTTGTATTTATGTAGTATTTGCGGCATTGGGGAAATGTTTTGTGGTTCGCTCTGTAGACAACCAACCAAGAAGCCATGAGAAAACCAAATCGGCTCAATCCAATTCCGAGGAACAATTAATGACTCCGGCGATAAAAGAGCCACTTTGGCAAAGAATTCAGAATTTAGAGGCAGTGGTAACTGAGATGGCTAATAAACCTAATACAATTCCTCCTGAAAAAGAGGATATTCTTCAAGAGTCATTGAGTCGCATAAAATGTATAGAATATGACTTGCAAAAAACAAAGAAGGCCCTGCTAGCCACTGCTTCAAAGCAAGTTGAGCTTGCCGAGTCATTGGAAAGCTTAAAGGAGAGTAAATTTGACGGAAGAAATTCATGTTGGCCTAAAAATAGAAGTTATGCCCCAGGAAGATGA
>Glyma18g36505.1 sequence type=predicted peptide gene model=Glyma18g36505 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILLCVCKKIDGDNYPEVLGNKFQSRLLQIIDTSQLPDFLDGSCSCPNDGGCLRSDKGPWNDPDILKLLHSREAMKLTKFGSPSVADGVDVKSYSSKVKSTGISEPLSASEVRLNPSAFVQSVPSSEKKRMRDSAPTGNVLEPLNAAREVVGDVDSISDSNNNYLRRLQEKPIPYIISILAQIAVKLLTCIYVVFAALGKCFVVRSVDNQPRSHEKTKSAQSNSEEQLMTPAIKEPLWQRIQNLEAVVTEMANKPNTIPPEKEDILQESLSRIKCIEYDLQKTKKALLATASKQVELAESLESLKESKFDGRNSCWPKNRSYAPGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
