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Report for Sequence Feature Glyma18g36340

Feature Type:gene_model
Chromosome:Gm18
Start:42655641
stop:42656180
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g36340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24840AT Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr3:9067301-9070256 FORWARD LENGTH=579 SoyBaseE_val: 3.00E-30ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
UniRef100_B9S518UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9S518_RICCO SoyBaseE_val: 1.00E-35ISS
UniRef100_I1N280UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N280_SOYBN SoyBaseE_val: 2.00E-103ISS

Expression Patterns of Glyma18g36340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g36340 not represented in the dataset
Glyma18g36340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g36340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g36340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g36340
>Glyma18g36340.1   sequence type=CDS   gene model=Glyma18g36340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAACAATTATCTCAGAAGACTACAGGAGAAGCCAATTCCATATATTATAAGTATTTTGGCTCAAATCGCAGTCAAATTGTTAACTTGTATTTATGTAGTATTTGCGGCATTGGGGAAATGTTTTGTGGTTCGCTCTGTAGACAACCAACCAAGAAGCCATGAGAAAACCAAATCGGCTCAATCCAATTCCGAGGAACAATTAATGACTCCGGCGATAAAAGAGCCACTTTGGCAAAGAATTCAGAATTTAGAGGCAGTGGTAACTGAGATGGCTAATAAACCTAATACAATTCCTCCTGAAAAAGAGGATATTCTTCAAGAGTCATTGAGTCGCATAAAATGTATAGAATATGACTTGCAAAAAACAAAGAAGGCCCTGCTAGCCACTGCTTCAAAGCAAGTTGAGCTTGCCGAGTCATTGGAAAGCTTAAAGGAGAGTAAATTTGAC
Predicted protein sequences of Glyma18g36340
>Glyma18g36340.1   sequence type=predicted peptide   gene model=Glyma18g36340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NNNYLRRLQEKPIPYIISILAQIAVKLLTCIYVVFAALGKCFVVRSVDNQPRSHEKTKSAQSNSEEQLMTPAIKEPLWQRIQNLEAVVTEMANKPNTIPPEKEDILQESLSRIKCIEYDLQKTKKALLATASKQVELAESLESLKESKFD






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