Glyma18g36290 - SoyBase

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Report for Sequence Feature Glyma18g36290

Feature Type:	gene_model
Chromosome:	Gm18
Start:	42618939
stop:	42621013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g36290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24870	AT	Annotation by Michelle Graham. TAIR10: Helicase/SANT-associated, DNA binding protein \| chr3:9075237-9084278 REVERSE LENGTH=1907	SoyBase	E_val: 1.00E-41	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
UniRef100_B9S516	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S516_RICCO	SoyBase	E_val: 7.00E-52	ISS
UniRef100_UPI0002337C61	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337C61 related cluster n=1 Tax=unknown RepID=UPI0002337C61	SoyBase	E_val: 5.00E-98	ISS

Expression Patterns of Glyma18g36290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g36290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g36290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g36290

Limit To All Plant Sequences

>Glyma18g36290.1   sequence type=CDS   gene model=Glyma18g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAGCATAACTTTTTTATATCCTGTTGGCACTTTTCCTGCTGATTTTGTATGGAATGATAACCAACCATTAGTACCTGTCCATAATTCACACGGGATTGCTCTTTCCCAAATCTGCCCGAACAACTTGAATGGAAATGGTTACCTTGAATTTTTCACATTCTGGTTGTACATTATTGTTTTGTTTGGCACAATCACAAGTATCTTAACCATTTTTGAGTTCTGCCCAGATGTCCTGTCTCTTGGGTATCAAGGCTCTCTTGCTGGTGGTTTACCAATGTCAAATCATAGTTCTGTTTCATCTGTGCATCCTTCAGCTGGGCTAAATTCATCACTTCCATCATCTTCTGGTATTGGTCTTAGCAATAACTTAACATCATCTGGTCCATTGGCAGCCCCTGCCAGGGATAGTAGATATGGAGTTTCACGAACTCCACCTTTATCAGTTGACGAACAGAAGAGAATACAACAATATAATCAGATGATATCTAGCAGAAACATGCCGCAATCTACCATGTCTGTTCCTGGATCTCTTTCAGGAAGTGATCTTGGTGGTGTGCGAATGTTGCCTGGTGGAAATGGTATGGGCATGTTGGGAGTGCCATCATCATCTATGCTTAGTTCTGGAGGCATGCCTTCTTCTAGTATGGTGGGGATTCCAAGCCCTGTAAATATGCATGCTGGAGTTGGTGCTGGACAAGGAAACTCAATGCTGAGACCTCGGGAGACTGTACATATGATGAGGTTAGGCGAGAAGAGACAGAATATAGGGAAAAATTTTCATATTAAAATTATTATGATAATAAACTAG

Predicted protein sequences of Glyma18g36290

Limit To All Plant Sequences

>Glyma18g36290.1   sequence type=predicted peptide   gene model=Glyma18g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NSITFLYPVGTFPADFVWNDNQPLVPVHNSHGIALSQICPNNLNGNGYLEFFTFWLYIIVLFGTITSILTIFEFCPDVLSLGYQGSLAGGLPMSNHSSVSSVHPSAGLNSSLPSSSGIGLSNNLTSSGPLAAPARDSRYGVSRTPPLSVDEQKRIQQYNQMISSRNMPQSTMSVPGSLSGSDLGGVRMLPGGNGMGMLGVPSSSMLSSGGMPSSSMVGIPSPVNMHAGVGAGQGNSMLRPRETVHMMRLGEKRQNIGKNFHIKIIMIIN*

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