Glyma18g36150 - SoyBase

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Report for Sequence Feature Glyma18g36150

Feature Type:	gene_model
Chromosome:	Gm18
Start:	42485140
stop:	42490979
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g36150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07210	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). \| chr3:2293000-2295119 REVERSE LENGTH=547	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D7NXT8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein 1 n=1 Tax=Triticum aestivum RepID=D7NXT8_WHEAT	SoyBase	E_val: 6.00E-136	ISS
UniRef100_I1N274	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N274_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g36150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g36150

Paralog	Evidence	Comments
Glyma08g46345	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g36150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g167400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g36150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g36150

Limit To All Plant Sequences

>Glyma18g36150.1   sequence type=CDS   gene model=Glyma18g36150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTGTGAGTCTGAGGGAATCATGGTGTTTCTGCAAAGGGGTGAGTAAGTCTGAGAGAATGAAAGCTGCTATTTTTACAGGGAAGGCTCAGGCCATGGCCACAATCGCCGCCACCGCCGCGCCTAATGGGGCTTCCGGCACCGGGTTTTTGATCCACAGGAACCTTCTATTGACCACTCACGCCAATCTTCCGTCGGTGGTCGCCGCTGACACCGCCGAGATCCGGCTGCACAATGGGGTGGCTGCCACTCTTGCTCCTCAGAGGTTTTTCATTACAAGTTCTGTATTAGATCTTACGATTGTGGGTTTAGATGACGGGGATGGAGACTCAAATGCACAGGGTCAGTGCCCTCACTACTTGAAGACCAGTTGTAAAGCCAATCTGGATCTGGGAAGTGCAGTGTACCTTTTAGGCTACACAGAGAAACAGGAGCTCACTGTTGGTGAAGGAAAGGTGGTCATAGCCACTGACAATCTCATAAAACTGTCAACTGATGGAATTCAATGGAGTCCTGGTTCTGCAGGTTTTGATGTGCACGGCAATCTAGCTTTTATGATATGCGATCCTATGAAATTAGCCACATCACCTAATACCAAATCTTCTTCAACTTCAACTTCATCATCATCATCCTCTTGGAAGAAAGACCACCCCATGCAATTTGGCATACCAATTTCTGTCATATGTGATTGGTTAAACCAGCATTGGGAAGGCAACCTTGATGAGCTTAACAAGCCAAAATTACCAATCATGCGATTGATGTCTACCGGCCAAAAGAGCGACCATTCATGTGCTTCCTTCACCCTGAGGCAAGTTTTCAAGTCAACTGAGGGTGATGATGATGGCACCCCTTCTTCATCAAACAACGCCTTGAAGGCAAGGGATCAGGGACCAAGCTCTTCTGCTGCTACCAACACAGTTGAAGAAGAAAGCTTGATCACTAATCCCAATGCTGCACATGTACAGGGAATTCCCACTCCAGAAATATATGAATCGCCTAGAGTAACCGCTGGCCCACTCAGAAGGAAAGAAAACATACCATTGCAGCTTTTGGACATCAATTTTCCTCCAAGGACTGCCAAACATGCAGTTTTTCCACAATTATCCAAACCAAAGTGTGCTGAAAATCTTGCCAAAGAACCTTTGCCCGAAAACCAAGTAGAAGGAGAACAAAACAAGCACACAAGGCCAACAACTCCTATTCCAGATGTTTCCTCAACAGGTTCTGTCAATGGAGCAGCTCAAAGCGAGGTTCAGTCTAGTTCGTCTCCCGTGGAAGTACACGAGATGCAAAATGGATACAGCAGCGAAGGCGAGACCATGTACTCAGCAGAAACCGCAGAGTCTCGCAACTACACAAGCCCTAGAGAGTTGAAGTTTCAACAAGTGGGAAGGAGCCAGAGTTGTGTGAGTTACAATAGGTGGGGTGCTGCACCAAGAAGCCAAGTTGCACGTGGGATGATGGTGGAAAATCAGAGAAGCTTCATGCATGTGAAGAGAATGTATTCACAAGGTGCAACAACTTCTCAGAGAAGCAATGACTATTTCAGCCCCACTGTCTCCTCAATCATGAAACGTAACAGCAGTTCAAGCAAGCCACCACCCCGGCAGAGTGCTGTTCATTCTCCTTCACCCAGATGGATGTTTTGA

Predicted protein sequences of Glyma18g36150

Limit To All Plant Sequences

>Glyma18g36150.1   sequence type=predicted peptide   gene model=Glyma18g36150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVSLRESWCFCKGVSKSERMKAAIFTGKAQAMATIAATAAPNGASGTGFLIHRNLLLTTHANLPSVVAADTAEIRLHNGVAATLAPQRFFITSSVLDLTIVGLDDGDGDSNAQGQCPHYLKTSCKANLDLGSAVYLLGYTEKQELTVGEGKVVIATDNLIKLSTDGIQWSPGSAGFDVHGNLAFMICDPMKLATSPNTKSSSTSTSSSSSSWKKDHPMQFGIPISVICDWLNQHWEGNLDELNKPKLPIMRLMSTGQKSDHSCASFTLRQVFKSTEGDDDGTPSSSNNALKARDQGPSSSAATNTVEEESLITNPNAAHVQGIPTPEIYESPRVTAGPLRRKENIPLQLLDINFPPRTAKHAVFPQLSKPKCAENLAKEPLPENQVEGEQNKHTRPTTPIPDVSSTGSVNGAAQSEVQSSSSPVEVHEMQNGYSSEGETMYSAETAESRNYTSPRELKFQQVGRSQSCVSYNRWGAAPRSQVARGMMVENQRSFMHVKRMYSQGATTSQRSNDYFSPTVSSIMKRNSSSSKPPPRQSAVHSPSPRWMF*

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