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Report for Sequence Feature Glyma18g36071

Feature Type:gene_model
Chromosome:Gm18
Start:42365298
stop:42367067
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25100AT Annotation by Michelle Graham. TAIR10: cell division cycle 45 | chr3:9144292-9146082 FORWARD LENGTH=596 SoyBaseE_val: 0ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006279GO-bp Annotation by Michelle Graham. GO Biological Process: premeiotic DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0048229GO-bp Annotation by Michelle Graham. GO Biological Process: gametophyte development SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2475 KOG CDC45 (cell division cycle 45)-like protein JGI ISS
PTHR10507Panther CELL DIVISION CONTROL PROTEIN 45-RELATED JGI ISS
PF02724PFAM CDC45-like protein JGI ISS
UniRef100_Q9LSG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: CDC45 (Cell division cycle 45)-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LSG6_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233EE28UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE28 related cluster n=1 Tax=unknown RepID=UPI000233EE28 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g36071 not represented in the dataset

Glyma18g36071 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g46385 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g167000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g36071.1   sequence type=CDS   gene model=Glyma18g36071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAGCAAAACGTTGAGTCGTTCTACGCTAAGCTTCGCGAGTCCGCGCTATCTTCTTCCTCTTCTCCGGTTCTGATTTTTCCCTCAACCTCCGACGTGGACTCTCTCTGTGCCCTAAAAATCATCTTCCACATCCTCGAATCCGATTCCATCCAATACGCGTGCTACCCAGTGTCGTCTTTTCACGAGATCCACAAGTACACGTCATCTTCCTCCTCAAACGACGAGCCTCTCTCCGTCGTTTTGGTTAATTGGGGCAACCACAGAGACCTCAGCAAAACCCTCAACCTCGCCCCCAACGCCCGCGTTTTCGTCGTCGACAGCCACCGCCCCATCCACCTCCGCAACCTCAGCGATCAAAACGACGCCGTTCTGGTGCTCTTCACTAAAGACGACGAGAACCAATCCGATCTCGCATCCGACTTCAACCTCGCCACGCTCGCCAACGCCGCCCCCACCGTCGATTCGGATTCCCAGTCCGACTCCGAATCTGAATCCGATTCCGACTCCGACTCCGGCTCCGAAAGAAATGGATCTAGAAAGAGGAGAAAGAAGAACCCTGAGGATGATGATGAAGATCCAATTAAGCTCTACCGGAAGCTGAAGAAAGGCTATTACCGATTGGGGACGTTTCACGGGAAGCCCTCTGGGTGTTTGATGTATGAACTTGCTGACAAGCTCAGGAAGAACACCAACGAGTTGCTCTGGCTCGCATGCATTTCCCTCACGGATCAATTTTTGCACGATAGATTGAGCGATGAGAGGTACCATGATGGAGTCATGGAGCTTGAGCAGCACATAAACAGTTCTGGTAATTTGGATGTGGTTACTTTGGTTACTCTTAAGGATGGCACCAAGATTCGTGCCCCGAATTTGTCGCGGATTACTTATGAGGACCAGCCGAGGCTCATGCTGTTGCAGGAGTGGAGCCTCTTTGACTCCATGATGTGCTCCTCGTACATTGCCACCAAGTTGAAGACGTGGAGCGAGAATGGGATGAAGAAGCTGAAGCTTCTGTTTGGGACGATGGGGTTCGCTCTTGGTGATTGCCAGCAGAAGTTTCAGCACATGAATGTGGAGGTGAAGCGCAATATGAAGAAGGAGTTTGAGAGGTTTTTGCCTGAGTATGGGCTCACTGATTTTTACTACAGGAGTTTCATTAGGACTCTCAAGTATAGTTCTAAGATTTCTGCTGCGGATGTGGTGTATGGTGTCACTGCATTGCTTGAGTCTTTCGTGAGATCAGATGGTTCTTGTGCTTCTAAGCAGTTTGGTGTGGCCTATGATGCGCTTTCTTTGAACAATATTGACAACTTGAGAACCGGGATGCAGCATGCTATTAAGATTCAGAGAGCAATTTTAAGGCAAGGCAGTGCTGCAATTACTAAGATTGGGTGTATAAGGAGTGGAAGGAGTTTCCGGTGGCTGAAGCTGGAGGATTCCAATGATGCTATGCTGTTGGGGTACCCACAGGCTTTGACTAAGTTCTGTTTATTTATCATGGATGCTTTGCGAGAGAAAGGGGCCAAAATGAAGCCTTTGATTTGTGTTTGTGTGTCTCAGGAGCCCGGGAAGGTGCTGATTGTGGGGGTTTGTGGGAGGCCGCGTTTGGGTGGGGCTCAAGCAAATGCATTTGGGATTGCATTTAGGACTGCGGCAGAGGAGATTGGAACTGAGTTCTTTCATGAGTTATTTGAATCATCGTGGATTGTTCTGGATGCTTCAGCTGTGAATTCTTTCATGGTTAGGTTGACCAAGAAGCTGTGA

>Glyma18g36071.1   sequence type=predicted peptide   gene model=Glyma18g36071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREQNVESFYAKLRESALSSSSSPVLIFPSTSDVDSLCALKIIFHILESDSIQYACYPVSSFHEIHKYTSSSSSNDEPLSVVLVNWGNHRDLSKTLNLAPNARVFVVDSHRPIHLRNLSDQNDAVLVLFTKDDENQSDLASDFNLATLANAAPTVDSDSQSDSESESDSDSDSGSERNGSRKRRKKNPEDDDEDPIKLYRKLKKGYYRLGTFHGKPSGCLMYELADKLRKNTNELLWLACISLTDQFLHDRLSDERYHDGVMELEQHINSSGNLDVVTLVTLKDGTKIRAPNLSRITYEDQPRLMLLQEWSLFDSMMCSSYIATKLKTWSENGMKKLKLLFGTMGFALGDCQQKFQHMNVEVKRNMKKEFERFLPEYGLTDFYYRSFIRTLKYSSKISAADVVYGVTALLESFVRSDGSCASKQFGVAYDALSLNNIDNLRTGMQHAIKIQRAILRQGSAAITKIGCIRSGRSFRWLKLEDSNDAMLLGYPQALTKFCLFIMDALREKGAKMKPLICVCVSQEPGKVLIVGVCGRPRLGGAQANAFGIAFRTAAEEIGTEFFHELFESSWIVLDASAVNSFMVRLTKKL*







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