SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52490 | AT | Annotation by Michelle Graham. TAIR10: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815 | SoyBase | E_val: 4.00E-22 | ISS |
| GO:0019538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PTHR11638 | Panther | ATP-DEPENDENT CLP PROTEASE | JGI | ISS | |
| PTHR11638:SF2 | Panther | CLPA/CLPB/CLPC-RELATED | JGI | ISS | |
| UniRef100_G7I415 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Medicago truncatula RepID=G7I415_MEDTR | SoyBase | E_val: 1.00E-36 | ISS |
| UniRef100_I1NEF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEF1_SOYBN | SoyBase | E_val: 3.00E-67 | ISS |
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Glyma18g36010 not represented in the dataset |
Glyma18g36010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g36010.1 sequence type=CDS gene model=Glyma18g36010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGAGGACTATTACTGTTGGCTTCACATTGCCACTGTCATGCGCAAGTGGCTGATGGGGGATTAGAAGTTTTAGAACATAAATTAACGACAAGGCATGTCGCCCCTCCCTTGAAATTATTTGGGATCTTCACCCCTTTACAGTTGCAATTGGGCAAGACATTGATATTCAACGACCATAATGATGAGAATCTAAAGATTCTATGTGATGCATTGGAGCAAAAGCCTCCACAACCGAAAAAAACAGCCAAGGAGATTGCAAGCATTGTGCTTCTTTTGAAGACAGATGTAAGGAAACAAACTTGGGTTTTCTTTGTAGGTGTGGATTCTGAAGCAAAACAACATGTGTCAAAAGAGCTAGCTAAAGTAATTTTTGGTTGTTTCTCTTTAGCTCATGAGGAGTCCAAATATAAAAGGCTAGGAGATGAGTTTGGGGGCAGTTATCTTCAGAGATTTGGGGAAGCAGTGAATGAGAATCCTCATAGGTTTTTCTTTATGGAATATTTGGAGCAAGTTGATGACTTTTCTAAACAGGTGAATCTGTCTGTGCCTATGAAGGATGCAATTGTCATTTTCATTAGTGAATGGTTAAATGCAGAGAGGAAACAAAATATTAACAACTCAGAGGACAAATTTTCATGCCTCTGTTTGGATTTGAACATCGGCATTGAAGTTGTTGTGCAAAAAAATGCTTGA
>Glyma18g36010.1 sequence type=predicted peptide gene model=Glyma18g36010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGGLLLLASHCHCHAQVADGGLEVLEHKLTTRHVAPPLKLFGIFTPLQLQLGKTLIFNDHNDENLKILCDALEQKPPQPKKTAKEIASIVLLLKTDVRKQTWVFFVGVDSEAKQHVSKELAKVIFGCFSLAHEESKYKRLGDEFGGSYLQRFGEAVNENPHRFFFMEYLEQVDDFSKQVNLSVPMKDAIVIFISEWLNAERKQNINNSEDKFSCLCLDLNIGIEVVVQKNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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