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Report for Sequence Feature Glyma18g35976

Feature Type:gene_model
Chromosome:Gm18
Start:42265810
stop:42271544
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g35976
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07190AT Annotation by Michelle Graham. TAIR10: B-cell receptor-associated protein 31-like | chr3:2285979-2287155 REVERSE LENGTH=220 SoyBaseE_val: 8.00E-98ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1962 KOG B-cell receptor-associated protein and related proteins JGI ISS
PTHR12701Panther BCR-ASSOCIATED PROTEIN, BAP JGI ISS
PTHR12701:SF1Panther B-CELL RECEPTOR-ASSOCIATED PROTEIN 31RELATED JGI ISS
PF05266PFAM Protein of unknown function (DUF724) JGI ISS
PF05529PFAM B-cell receptor-associated protein 31-like JGI ISS
UniRef100_B9S4Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bcr-associated protein, bap, putative n=1 Tax=Ricinus communis RepID=B9S4Z8_RICCO SoyBaseE_val: 4.00E-118ISS
UniRef100_UPI000233EE26UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE26 related cluster n=1 Tax=unknown RepID=UPI000233EE26 SoyBaseE_val: 3.00E-151ISS

Expression Patterns of Glyma18g35976
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g35976 not represented in the dataset
Glyma18g35976 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g35976
ParalogEvidenceComments
Glyma08g46410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g35976 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g166700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g35976
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g35976
>Glyma18g35976.1   sequence type=CDS   gene model=Glyma18g35976   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCAGTTGTTGTTCATGGTGATTTTTGTCGAGGGGGTTCTGGCATTTCTTTTGTTGGTTAAGATAGGACCTTTGAGAGATCTTGTGATAAAGAGCCTGGATCAGTTGAAGATGGGGAAGGGTCCAGCTACAGTGAAAACCATTGCTGGTACCATGTCGGTGATTCTCCTTTCAAGTCTCATGAGCATTGTCAAGATCCAGAACAAAGGTGCTAAACTTGGTACTATGTCGCCCATGGATCAAGTTCTGTGGAGAACTCATTTGCTCGAGGCTTCACTGATGGGTTTTACATTATTCCTTGGATTCCTAATTGATCGTACCCACCATTATCTTCAAAAGCTTATTAATTTAAGGAGTAATGCGGGAGCTTCAAAAGAAGAATTGGAAAACCTTAAAAAAGAAACTGTCCAACTTAAAGAAAAGGATGAGAAAGCATCCAAGGAGATTAAACAGCTAAAGGAAGAACTTTCACATCTGTCCAAAAGTTTGGAAAAGATAAAATTGGAATCTGAAGAGAAGGATAAGAAAGTTGAGACCGCCGAAGCACATGTTGCTTCCCTCCAAAAGCAAGCTGCAGATCTACTGCTTGAATATGATAGACTCTTAGAAGACAACCAAAACCTTCAGGCTCAAACACTGGGACACAAGAGTTGA
Predicted protein sequences of Glyma18g35976
>Glyma18g35976.1   sequence type=predicted peptide   gene model=Glyma18g35976   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQLLFMVIFVEGVLAFLLLVKIGPLRDLVIKSLDQLKMGKGPATVKTIAGTMSVILLSSLMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLMGFTLFLGFLIDRTHHYLQKLINLRSNAGASKEELENLKKETVQLKEKDEKASKEIKQLKEELSHLSKSLEKIKLESEEKDKKVETAEAHVASLQKQAADLLLEYDRLLEDNQNLQAQTLGHKS*






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