Report for Sequence Feature Glyma18g35940
Feature Type: gene_model
Chromosome: Gm18
Start: 42205970
stop: 42213940
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g35940
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G07180 AT
Annotation by Michelle Graham. TAIR10: GPI transamidase component PIG-S-related | chr3:2282455-2285475 REVERSE LENGTH=599
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2459
KOG
GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis
JGI ISS
PTHR21072 Panther
FAMILY NOT NAMED
JGI ISS
PTHR21072:SF5 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF10510 PFAM
Phosphatidylinositol-glycan biosynthesis class S protein
JGI ISS
UniRef100_Q9SFU8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T1B9.16 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SFU8_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233F3DE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F3DE related cluster n=1 Tax=unknown RepID=UPI000233F3DE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g35940
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g35940
Paralog Evidence Comments
Glyma08g46420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g35940 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g166600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g35940
Coding sequences of Glyma18g35940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g35940.1 sequence type=CDS gene model=Glyma18g35940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGGAGTTGGATGTTTTGTCACGGAAGCATATATGCTTTAATCTTCATTCATGTGCTACTACGCTTGGATCACTTTCTAGATTGGTACAATCATTGCCAAGGATGATTATCATGGATGAGATTGGAAAACAGGTTAAGTTTTCTCTTGAGGCTGCAAAATTTGCTCAAAGTAATGCATCTATTGGAATATATAATGCTTCAGCTGTATCATCAAGACAATCAAGATCTCTGGCAGAGGATGCCTTTTTTCATCCTTCAATTATGTCCATAAGCTATTATTCATTTGAGCACTGCTTTGCCATCTATTCGCCATTTTTTCTGCCAGTTACTATGCATGTCCTCCTTGCTGCTTTACGAGAATGGAAAAGGTACAAGCAAGAAAATAGGAAGTACTTAGCATCGAAGGCCAAAGTAAAAGTTTCATAA
Predicted protein sequences of Glyma18g35940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g35940.1 sequence type=predicted peptide gene model=Glyma18g35940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEISDSPSTSKSAEENTQTQTPESDLKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSIEIYRAPLPFDRIDAFSSQIESKPLSFPCHFQAIFIGFDFDFKVSHDDVGAAIARKMSDLSHGGGCGGCGGNYSVAVAVDRGDINAFDFGEKLRGSDEDADELVKSVVSEYGGGNAYSVVVVNEEGEVRSVVGKYRHAWIVGRVEEEEAVLHVAEVFVKVFVNGGDVEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLRPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHGSHMFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPNGEISKTNGFISPMWGGVVVWNPQSCIKDFESMDPVRHTISPQDLLKLFEVLMGQLRQLLGLKSDNLYVGESGTSILLGSERGFTEWELDVLSRKHICFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKFAQSNASIGIYNASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHVLLAALREWKRYKQENRKYLASKAKVKVS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
