Glyma18g35790 - SoyBase

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Report for Sequence Feature Glyma18g35790

Feature Type:	gene_model
Chromosome:	Gm18
Start:	42063101
stop:	42065094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g35790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65450	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr1:24315875-24318895 FORWARD LENGTH=450	SoyBase	E_val: 1.00E-69	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_B9S503	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate N-benzoyltransferase protein, putative n=1 Tax=Ricinus communis RepID=B9S503_RICCO	SoyBase	E_val: 6.00E-164	ISS
UniRef100_UPI000233F3D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3D9 related cluster n=1 Tax=unknown RepID=UPI000233F3D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g35790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g35790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g166000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g35790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g35790

Limit To All Plant Sequences

>Glyma18g35790.1   sequence type=CDS   gene model=Glyma18g35790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAGATTGAACTTGTAGAGAAAGTTGTAATTGCTCCCGAGCAACCTACACCTCGCAAGAGAATGTTCTTGTCAAACATTGACCTGTCCCTTGTTGTTTACCAAGACTCTGCCTCCTTTTTTGATCCTCCAAGCACCCAAATGAGCTTTGGTGAGATTTGTGGCAAATTATACAGTGCACTTGGTAAAATGCTTGTGCAGTATGACTTTATGGCTGGCAGACTAGTGCCAAGTTTGGAGGAGACTCATCGGTTTGAAATAGACTGTAATGGTGCTGGCATTGTCGTAGTGGCCGCAAGAACTGACAGAAAATTGAGTGAATTTGGTGTGATTTCTGCACCTAATCCTGAGTTGAGGGAATTGGTTGTTTTCTTGCAGGAAGAGGGTGATCAAGAAACTGACATGAAAGAAAGGTCCCTTGCTTCCTTACAGCTGACTCAGTTTGGCTGTGGAAGTTTGGCTCTTGCTTCTCGCTACAACCACTGCACACTGGACGGTTCCGCAATAAGAGATTTTGAGGTAAATTTAGGAGCATTAACACGCGGTGGAGACCTCATCATAGTACCAAATGCTGATAGAACACTTCTGAGAGCTCGAAACCCTCCAAAGATAAGCCATCCACATTTTGAGTATTCAAAATCCACTGAAACACACAACTTGTTCACTATCCAAGGCAAAAGTGGTACCAATGCTACGCAATCAGCGCCCCAAAATCAAATTCGTGTGCTTCATTTGTCACCAGAAAAAATAGCCAGCTTCAAAAAGAAGGCCCTGAAGGAAAACACCACCTTAAAGAACATCACAACTTTTCAGGTTGTTGCTGCAAAAATATGGAAGGCAAGAAGCATTGCAACAAAGATGTTAGAGGAAAAAGTGTCCACAATGCTGTTTCCAGTGGATGTTAGGAAAAGGGTTGTTCCTGAACTCCCAAATGGCTTTGCAGGTAATGCGTTGGTGCCTGGTTTTGCAAGAGCAAGTGTGAGGGATCTCATTGAGCTAGAAGATGCTTGCCACATAAGGAAAGTGCAAGAAGGGGTTGAGAGGTTGGATGATGAGTACATAAAGTCAGGGATAGATTGGTTGGAGGTGAACAAAGGGGCACCTTGTATGGAAGATAGTTTCTCATTGGTGGCATGGTGGAGACTAGGGCTAGAGGAGCAGCTTTTTGCATGGGGGAGACTAAAGTGTGCCACCCCACTTGCAGTTAAGGCTGGTTTGGTCATGCTGTTGCCAGGACCACAAGATGAAGGGGGTCTTAACATATGCCTGGATTTACCTGAGGATCAAATGCAGGAGTTTAGTAGGATAATGCTAGAAGTTTAA

Predicted protein sequences of Glyma18g35790

Limit To All Plant Sequences

>Glyma18g35790.1   sequence type=predicted peptide   gene model=Glyma18g35790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEIELVEKVVIAPEQPTPRKRMFLSNIDLSLVVYQDSASFFDPPSTQMSFGEICGKLYSALGKMLVQYDFMAGRLVPSLEETHRFEIDCNGAGIVVVAARTDRKLSEFGVISAPNPELRELVVFLQEEGDQETDMKERSLASLQLTQFGCGSLALASRYNHCTLDGSAIRDFEVNLGALTRGGDLIIVPNADRTLLRARNPPKISHPHFEYSKSTETHNLFTIQGKSGTNATQSAPQNQIRVLHLSPEKIASFKKKALKENTTLKNITTFQVVAAKIWKARSIATKMLEEKVSTMLFPVDVRKRVVPELPNGFAGNALVPGFARASVRDLIELEDACHIRKVQEGVERLDDEYIKSGIDWLEVNKGAPCMEDSFSLVAWWRLGLEEQLFAWGRLKCATPLAVKAGLVMLLPGPQDEGGLNICLDLPEDQMQEFSRIMLEV*

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