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Report for Sequence Feature Glyma18g35400

Feature Type:gene_model
Chromosome:Gm18
Start:41669443
stop:41673285
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g35400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48720AT Annotation by Michelle Graham. TAIR10: x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300 SoyBaseE_val: 8.00E-76ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007140GO-bp Annotation by Michelle Graham. GO Biological Process: male meiosis SoyBaseN/AISS
GO:0007143GO-bp Annotation by Michelle Graham. GO Biological Process: female meiosis SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010165GO-bp Annotation by Michelle Graham. GO Biological Process: response to X-ray SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_C6TMG7UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMG7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6NLW5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein XRI1 n=2 Tax=Arabidopsis thaliana RepID=XRI1_ARATH SoyBaseE_val: 4.00E-73ISS

Expression Patterns of Glyma18g35400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g35400
ParalogEvidenceComments
Glyma08g46560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g35400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g164900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g35400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g35400
>Glyma18g35400.2   sequence type=transcript   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGAGCACTAACTAGAGAACATATACATACACACACATGTAGTGAGAGAGAGAGGGGGTGGTTTTTGGTTTCTCTTTGGTTCCTTTCTGATATGCCATATTTGCATCTCATGCACCAATTCCTCTGTAACCGTTATTATTTTTGTGAAGGGGTTGGAGAGAAAAAAGGACACTGATCAGTGACTACTGTTTGGTTGCTACTACTGAAAATGGACTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCGATTATGAAAATTCACAAGGGCTATGGAATGGAGTTCCTCAAAATGAAGATCTTTCCAATGTGTTCAATGATGAAACAACCCCAGTGAAAGCTTGTGGGGACTTTGCATACAATGTCAATAATAGTGGGATATATCTGTGTACATCTATCTACCCTCCCCAGGTTCCACTAGAGTTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTGACCAAATTAAGAGAAGGCGGATGCTACAATTCAATACTCAAGATGGGGGTCATTTCCTCTCCAATGAACATATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGTCAAATGAGGATGTTTTCCCTGAATTATCACATTGGGTTTCTGGGGCATCAGGAAGTGCATCTGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTATGTCCCGATGATTTGAATTTTTCTGGGGCAGATGCTGTTCAAATTGATGTTGCAGATCTGTGCAACTTCCCACCTGCGTGTGAACAAAATGTGCTTCAGCATCATGTCACCCAAACTCCCAAAAATATTGTCTTCAAAGGAGGAAAATCATTTATAGAAACACCGACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTACCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCTGTAGTTGGAAAAACAAAAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACCAAAGGCTAAGCCTTAAGTCTTTAGTACTAACTTCTGTCTTGGGTCTGGCCTCATTTTCTGTATGTAAAGCACCTGGTAATTTATAGTAGGTATTGCAATTTTTGTTCTTATTGGCATCTATAAATAACACTACCTTAGTGTTTGTATTCTAGGTGAGGATCTAGATGACTGTGGCTTTTCTCTTGGTAGATGTTCTTGTTTGAGCTAATTCGGCAATGAGAATTTTGATCAGTCCCGATGCTTTGGCTCATAAAAACTAATGTAACTTGCTTTAGAATTTGAATCTATGATATTTGAGAATTAACG

>Glyma18g35400.3   sequence type=transcript   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATCTGACAGGCAGTTTGACATTGTCTAACAATCACTATGTACAACTGGAATATATTGTTCTTTTAAATTTTTATAATTGAGGATGGATGAGCTTGACATAACAATGGTAAGGTTATTGCCTTGTGATTTGGAGCTCACAATTTCAAATCATTGAAACAATCTCTCTGCTTGTAGGGATATATCTGTGTACATCTATCTACCCTCCCCAGGTTCCACTAGAGTTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTGACCAAATTAAGAGAAGGCGGATGCTACAATTCAATACTCAAGATGGGGGTCATTTCCTCTCCAATGAACATATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGTCAAATGAGGATGTTTTCCCTGAATTATCACATTGGGTTTCTGGGGCATCAGGAAGTGCATCTGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTATGTCCCGATGATTTGAATTTTTCTGGGGCAGATGCTGTTCAAATTGATGTTGCAGATCTGTGCAACTTCCCACCTGCGTGTGAACAAAATGTGCTTCAGCATCATGTCACCCAAACTCCCAAAAATATTGTCTTCAAAGGAGGAAAATCATTTATAGAAACACCGACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTACCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCTGTAGTTGGAAAAACAAAAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACCAAAGGCTAAGCCTTAAGTCTTTAGTACTAACTTCTGTCTTGGGTCTGGCCTCATTTTCTGTATGTAAAGCACCTGGTAATTTATAGTAGGTATTGCAATTTTTGTTCTTATTGGCATCTATAAATAACACTACCTTAGTGTTTGTATTCTAGGTGAGGATCTAGATGACTGTGGCTTTTCTCTTGGTAGATGTTCTTGTTTGAGCTAATTCGGCAATGAGAATTTTGATCAGTCCCGATGCTTTGGCTCATAAAAACTAATGTAACTTGCTTTAGAATTTGAATCTATGATATTTGAGAATTAACG
Coding sequences of Glyma18g35400
>Glyma18g35400.1   sequence type=CDS   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCGATTATGAAAATTCACAAGGGCTATGGAATGGAGTTCCTCAAAATGAAGATCTTTCCAATGTGTTCAATGATGAAACAACCCCAGTGAAAGCTTGTGGGGACTTTGCATACAATGTCAATAATAGTGAGTTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTGACCAAATTAAGAGAAGGCGGATGCTACAATTCAATACTCAAGATGGGGGTCATTTCCTCTCCAATGAACATATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGTCAAATGAGGATGTTTTCCCTGAATTATCACATTGGGTTTCTGGGGCATCAGGAAGTGCATCTGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTATGTCCCGATGATTTGAATTTTTCTGGGGCAGATGCTGTTCAAATTGATGTTGCAGATCTGTGCAACTTCCCACCTGCGTGTGAACAAAATGTGCTTCAGCATCATGTCACCCAAACTCCCAAAAATATTGTCTTCAAAGGAGGAAAATCATTTATAGAAACACCGACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTACCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCTGTAGTTGGAAAAACAAAAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACCAAAGGCTAA

>Glyma18g35400.2   sequence type=CDS   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTACAGCAATGACAACAAGGAGCCATGGGATTGGCATAGGGAGGATTATTGTCTCCAAAGGAGTTTCGATTATGAAAATTCACAAGGGCTATGGAATGGAGTTCCTCAAAATGAAGATCTTTCCAATGTGTTCAATGATGAAACAACCCCAGTGAAAGCTTGTGGGGACTTTGCATACAATGTCAATAATAGTGGGATATATCTGTGTACATCTATCTACCCTCCCCAGGTTCCACTAGAGTTACAAAAGGAATCAGACAAATGTTTGAAGAGTTCTGACCAAATTAAGAGAAGGCGGATGCTACAATTCAATACTCAAGATGGGGGTCATTTCCTCTCCAATGAACATATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGTCAAATGAGGATGTTTTCCCTGAATTATCACATTGGGTTTCTGGGGCATCAGGAAGTGCATCTGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTATGTCCCGATGATTTGAATTTTTCTGGGGCAGATGCTGTTCAAATTGATGTTGCAGATCTGTGCAACTTCCCACCTGCGTGTGAACAAAATGTGCTTCAGCATCATGTCACCCAAACTCCCAAAAATATTGTCTTCAAAGGAGGAAAATCATTTATAGAAACACCGACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTACCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCTGTAGTTGGAAAAACAAAAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACCAAAGGCTAA

>Glyma18g35400.3   sequence type=CDS   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACAATTCAATACTCAAGATGGGGGTCATTTCCTCTCCAATGAACATATGTCTTCAGCATATTTGAAAGGGAAGGAGGAGTCAAATGAGGATGTTTTCCCTGAATTATCACATTGGGTTTCTGGGGCATCAGGAAGTGCATCTGCTTCCAATTATGAGGACCTTGAGTCAGCTGAAGGGTGGCTAGCAGATTGCTTTAAGGATGCTGAAATGCAATTATGTCCCGATGATTTGAATTTTTCTGGGGCAGATGCTGTTCAAATTGATGTTGCAGATCTGTGCAACTTCCCACCTGCGTGTGAACAAAATGTGCTTCAGCATCATGTCACCCAAACTCCCAAAAATATTGTCTTCAAAGGAGGAAAATCATTTATAGAAACACCGACAAAGCTAGCTGCTTCTGTGGCCTATCCATTTACCTTCATTAAACCCTGTGGTGCCCATGGAGATGTCACTCTGAAGGAAATAAATCAGCGCATTCTGTCTCCACCACCTCCTTTGAAGTCCCAACAAAGTATGGAAGATCCATCAGCTTACCCAAAATCAGCATTTTCTGGGAAGCCTGTAGTTGGAAAAACAAAAATTCACATTGAAGGGGGAAAAGGTAGCATCACCATTATGAGAACCAAAGGCTAA
Predicted protein sequences of Glyma18g35400
>Glyma18g35400.1   sequence type=predicted peptide   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSNDNKEPWDWHREDYCLQRSFDYENSQGLWNGVPQNEDLSNVFNDETTPVKACGDFAYNVNNSELQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKGKEESNEDVFPELSHWVSGASGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADAVQIDVADLCNFPPACEQNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKEINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMRTKG*

>Glyma18g35400.2   sequence type=predicted peptide   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSNDNKEPWDWHREDYCLQRSFDYENSQGLWNGVPQNEDLSNVFNDETTPVKACGDFAYNVNNSGIYLCTSIYPPQVPLELQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKGKEESNEDVFPELSHWVSGASGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADAVQIDVADLCNFPPACEQNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKEINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMRTKG*

>Glyma18g35400.3   sequence type=predicted peptide   gene model=Glyma18g35400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQFNTQDGGHFLSNEHMSSAYLKGKEESNEDVFPELSHWVSGASGSASASNYEDLESAEGWLADCFKDAEMQLCPDDLNFSGADAVQIDVADLCNFPPACEQNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKEINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMRTKG*






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