Glyma18g35390 - SoyBase

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Report for Sequence Feature Glyma18g35390

Feature Type:	gene_model
Chromosome:	Gm18
Start:	41630363
stop:	41636846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g35390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25040	AT	Annotation by Michelle Graham. TAIR10: endoplasmic reticulum retention defective 2B \| chr3:9124479-9126051 FORWARD LENGTH=215	SoyBase	E_val: 1.00E-139	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006621	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen	SoyBase	N/A	ISS
GO:0010204	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0046923	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding	SoyBase	N/A	ISS
KOG3106	KOG	ER lumen protein retaining receptor	JGI		ISS
PTHR10585	Panther	ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED	JGI		ISS
PF00810	PFAM	ER lumen protein retaining receptor	JGI		ISS
UniRef100_C6T4N9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=C6T4N9_SOYBN	SoyBase	E_val: 5.00E-155	ISS
UniRef100_C6T4N9	UniRef	Annotation by Michelle Graham. Best UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=C6T4N9_SOYBN	SoyBase	E_val: 5.00E-155	ISS

Expression Patterns of Glyma18g35390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g35390

Paralog	Evidence	Comments
Glyma08g46570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g35390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g164800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g35390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g35390

Limit To All Plant Sequences

>Glyma18g35390.2   sequence type=transcript   gene model=Glyma18g35390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTCAAAAAAAAAAAAAAAAGCAAGCGAAGGAAAGAAAAGAAACGAGAGTAAAAGTGACTCTCACCCGGGGCATGTTCTGAAGTCTGCTTCTCTGCTTGTATGCAACGGCCACACACACCCTTAGTCGCCTGAAAACGATTGTTGTTGCAGGGCAAACACAAAGATCCGGGTCGACCCGTCGCAGATCCGATCCAAATAAGAAAGATGAATATTTTCAGGTTAGCCGGAGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAAATCCTGCGCCGGTGTCTCATTGAAAACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACTTAGATATCTTTACTTATTACGTATCTCTCTATAATACCATTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTGTGGTACATGAGGTACCACAAGGTTGTTCGTAGATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAATATGTCTTTCTTCTTGGTGCATACAGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAACATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACAAAAAGCTTCATTTGCCAGCATGAGTGTATTCTTCTGTTCTTAAAAACAAGGGTCTATGTGGACAATTAACAGTGAGCAGAGAGGATCCACAAATTTGTCTGGACATAGTGGTTTCTGATTTACAATTGCCTATTTGTTCGTTCTTGCCAGCTCAAATACTACTGTACTAATTACTAGGAAGATTATAGACAAAAAGCATCAAATTGTTTGTGATTGTAATTTGCAATTTTAACTAGAAAAAGTATTTAGATCTAGATTGTGGCACAATGCTTAATTTCGATCTTTTACTCTTCCCTTTCTTAAAGATATTTCTTGGATCAACACTTTGCTTTCATGGTAAAGATAGTATAGGTAATTGTGGTGGAGGATTTTAAACAGGTGCAGCCTTATGTGTGAATAATTAGTTGAAATTATTCGAGAATTTGTCAACAAAGATAGTGAACATTAAC

Coding sequences of Glyma18g35390

Limit To All Plant Sequences

>Glyma18g35390.1   sequence type=CDS   gene model=Glyma18g35390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCAATGATGGTCAATCACAATTATTTGTTTGGCTGCTGCTTAAGCTATTGCAGTGTCTCATTGAAAACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACTTAGATATCTTTACTTATTACGTATCTCTCTATAATACCATTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTGTGGTACATGAGGTACCACAAGGTTGTTCGTAGATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAATATGTCTTTCTTCTTGGTGCATACAGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAACATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACAAAAAGCTTCATTTGCCAGCATGA

>Glyma18g35390.2   sequence type=CDS   gene model=Glyma18g35390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATTTTCAGGTTAGCCGGAGACATGACCCATTTGGCCAGCGTCCTCGTCCTCCTCCTCAAGATCCACACCATCAAATCCTGCGCCGGTGTCTCATTGAAAACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACTTAGATATCTTTACTTATTACGTATCTCTCTATAATACCATTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTGTGGTACATGAGGTACCACAAGGTTGTTCGTAGATCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAATATGTCTTTCTTCTTGGTGCATACAGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAACATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACAAAAAGCTTCATTTGCCAGCATGA

Predicted protein sequences of Glyma18g35390

Limit To All Plant Sequences

>Glyma18g35390.1   sequence type=predicted peptide   gene model=Glyma18g35390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAMMVNHNYLFGCCLSYCSVSLKTQELYALVFACRYLDIFTYYVSLYNTIMKLIFLGSSFSIVWYMRYHKVVRRSYDKDQDTFRHYFLVLPCLLLALLINEKFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALYILNWIYRYFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNKKLHLPA*

>Glyma18g35390.2   sequence type=predicted peptide   gene model=Glyma18g35390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFACRYLDIFTYYVSLYNTIMKLIFLGSSFSIVWYMRYHKVVRRSYDKDQDTFRHYFLVLPCLLLALLINEKFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALYILNWIYRYFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNKKLHLPA*

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