Glyma18g35300 - SoyBase

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Report for Sequence Feature Glyma18g35300

Feature Type:	gene_model
Chromosome:	Gm18
Start:	41432425
stop:	41433677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g35300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24100	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised protein family SERF \| chr3:8703373-8704045 FORWARD LENGTH=69	SoyBase	E_val: 4.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13596	Panther	SMALL EDRK-RICH FACTOR 1	JGI		ISS
PF04419	PFAM	4F5 protein family	JGI		ISS
UniRef100_B6UEA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4F5 protein family protein n=1 Tax=Zea mays RepID=B6UEA2_MAIZE	SoyBase	E_val: 1.00E-07	ISS
UniRef100_I1N255	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N255_SOYBN	SoyBase	E_val: 7.00E-29	ISS

Expression Patterns of Glyma18g35300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g35300

Paralog	Evidence	Comments
Glyma08g46603	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g35300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g164200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g35300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g35300

Limit To All Plant Sequences

>Glyma18g35300.3   sequence type=transcript   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCACGTTTTCATACTTTGCGCACCAATCTTGCTCTCTGCTTTCTCTCGATCAGGGTTTCCCCTCGTCTCCGAGCTCGTTTCGTTCTCGAAGAATCGATCTGCGATAATGACTCGCGGTAACCAGAGGGATCGTGATCGCGAAAGGGCTCAGGCTAGAACCGGTGGTAAAGGCAAGCAGAAAGATGATGGGTTGACCCCTGAACAGCGCAGGGAAAGATGCGAAGGCGCTGCAGGAGAAGGCGGCAAAGAAAGCGGCACAGGATGCAGGAGGGAATAATGCAGGTGGAACCAAAAAATAGGCAATAATTCAATGAGTGGTTTGAGTTCGACATTGTTGTTTGTAGACATGGAATTTATGGAAAATTTATGTTGCGTTATTCGTGGAGTATGATGTGTTTATTAATGTAATTTGTGACAGATGAATAAATAAGTTGTGCTTCTTTGAAAGGTGTTGTCGCTGGGGGGCTGAATCAATAACTTGTATCTTTGTTTGGAATAAATAGTATTTGGCAATGATATTGTGTTTGCTCCCCTGTCTTATTCTCTGAATGGTTTGCTGTTGCTACTTTTGTGATGACTCATTGTGTGCCAAACACAGTTCTTTAAATCAGCAATGTTTAATTTGTAAATGTAAAGCTGTTTGTATGAAAATTGTTTTGTGGTTGATAAAAGAAGGAATTATTTGTATTGC

>Glyma18g35300.4   sequence type=transcript   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCACGTTTTCATACTTTGCGCACCAATCTTGCTCTCTGCTTTCTCTCGATCAGGGTTTCCCCTCGTCTCCGAGCTCGTTTCGTTCTCGAAGAATCGATCTGCGATAATGACTCGCGGTAACCAGAGGGATCGTGATCGCGAAAGGGCTCAGGCTAGAACCGGTGGTAAAGGCAAGCAGAAAGATGATGGGTTGACCCCTGAACAGCGCAGGGAAAGGTTGGGTTGATGTCATTTATCACACATGCTTTGTAATCTCTCACAATTTTATTTTATTTTTTAA

Coding sequences of Glyma18g35300

Limit To All Plant Sequences

>Glyma18g35300.1   sequence type=CDS   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCGCGGTAACCAGAGGGATCGTGATCGCGAAAGGGCTCAGGCTAGAACCGGTGGTAAAGGCAAGCAGAAAGATGATGGGTTGACCCCTGAACAGCGCAGGGAAAGAGATGCGAAGGCGCTGCAGGAGAAGGCGGCAAAGAAAGCGGCACAGGATGCAGGAGGGAATAATGCAGGTGGAACCAAAAAATAG

>Glyma18g35300.3   sequence type=CDS   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCACGTTTTCATACTTTGCGCACCAATCTTGCTCTCTGCTTTCTCTCGATCAGGGTTTCCCCTCGTCTCCGAGCTCGTTTCGTTCTCGAAGAATCGATCTGCGATAATGACTCGCGGTAACCAGAGGGATCGTGATCGCGAAAGGGCTCAGGCTAGAACCGGTGGTAAAGGCAAGCAGAAAGATGATGGGTTGACCCCTGAACAGCGCAGGGAAAGATGCGAAGGCGCTGCAGGAGAAGGCGGCAAAGAAAGCGGCACAGGATGCAGGAGGGAATAA

>Glyma18g35300.4   sequence type=CDS   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCACGTTTTCATACTTTGCGCACCAATCTTGCTCTCTGCTTTCTCTCGATCAGGGTTTCCCCTCGTCTCCGAGCTCGTTTCGTTCTCGAAGAATCGATCTGCGATAATGACTCGCGGTAACCAGAGGGATCGTGATCGCGAAAGGGCTCAGGCTAGAACCGGTGGTAAAGGCAAGCAGAAAGATGATGGGTTGACCCCTGAACAGCGCAGGGAAAGGTTGGGTTGA

Predicted protein sequences of Glyma18g35300

Limit To All Plant Sequences

>Glyma18g35300.1   sequence type=predicted peptide   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRERDAKALQEKAAKKAAQDAGGNNAGGTKK*

>Glyma18g35300.3   sequence type=predicted peptide   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FHVFILCAPILLSAFSRSGFPLVSELVSFSKNRSAIMTRGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRERCEGAAGEGGKESGTGCRRE*

>Glyma18g35300.4   sequence type=predicted peptide   gene model=Glyma18g35300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FHVFILCAPILLSAFSRSGFPLVSELVSFSKNRSAIMTRGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRERLG*

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