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Report for Sequence Feature Glyma18g35230

Feature Type:gene_model
Chromosome:Gm18
Start:41373647
stop:41375132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g35230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56750AT Annotation by Michelle Graham. TAIR10: N-MYC downregulated-like 1 | chr5:22957986-22960606 FORWARD LENGTH=346 SoyBaseE_val: 5.00E-37ISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0060918GO-bp Annotation by Michelle Graham. GO Biological Process: auxin transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11034Panther N-MYC DOWNSTREAM REGULATED JGI ISS
PTHR11034:SF3Panther N-MYC DOWNSTREAM REGULATED-RELATED JGI ISS
PF03096PFAM Ndr family JGI ISS
UniRef100_G7LJK8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen specific protein SF21 n=1 Tax=Medicago truncatula RepID=G7LJK8_MEDTR SoyBaseE_val: 2.00E-40ISS
UniRef100_UPI000233F3CBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F3CB related cluster n=1 Tax=unknown RepID=UPI000233F3CB SoyBaseE_val: 1.00E-59ISS

Expression Patterns of Glyma18g35230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g35230 not represented in the dataset
Glyma18g35230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g35230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g35230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g35230
>Glyma18g35230.1   sequence type=CDS   gene model=Glyma18g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTATGTGTAGGCTACATTAATTTTGGATTGCCATTTCAAGAGCATCATATTCAAACTGGTTGTGGTATTATGTCTATCATAGTCTATGACGATCCTGACAAACTAGCTCTGATCACTTATCCAGATTTGGCTCTAAATTGTTACATAATGATTGCATTGTACATGTATATCTGGAAATATGATTCAATATTTTACTTGACTATTTTATGTCCAGAAGCAGCTTCTTTACTGCTTCACAACTTTTGCATATATCATATCAGTCCTCCTGGACATGAGTTGGGAGCAACTGCAAATTGTGCCGAGGATCCTATTCCTTCTGCTGAAGATTTAGCAGATCAAATAATTGAGGTCCTCAACTATTTTGGTAAATCTCTCTACATATTTGCTTCCTCGTTTCTAATTTTGTGTAAATGTAGTTTGAACCTGAATGGGTCTGGAGCTGGAGTTTCAACTCCCAGTTCAACCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCCAACACCAAGATCCCCTATGAGTACATTAGCACTGGACTTCGC
Predicted protein sequences of Glyma18g35230
>Glyma18g35230.1   sequence type=predicted peptide   gene model=Glyma18g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FLCVGYINFGLPFQEHHIQTGCGIMSIIVYDDPDKLALITYPDLALNCYIMIALYMYIWKYDSIFYLTILCPEAASLLLHNFCIYHISPPGHELGATANCAEDPIPSAEDLADQIIEVLNYFGKSLYIFASSFLILCKCSLNLNGSGAGVSTPSSTFFGSSLKKVIASRVPNTKIPYEYISTGLR






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