Glyma18g35220 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g35220

Feature Type:	gene_model
Chromosome:	Gm18
Start:	41366870
stop:	41370572
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g35220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59540	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr5:23996293-23997576 REVERSE LENGTH=366	SoyBase	E_val: 5.00E-145	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_C6TMC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMC0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JKB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JKB4_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g35220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g35220

Paralog	Evidence	Comments
Glyma08g46610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g35220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g164100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g35220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g35220

Limit To All Plant Sequences

>Glyma18g35220.2   sequence type=transcript   gene model=Glyma18g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAGGTTCAATCATATGATTTTTTCCCTCATTGGCTTCCATTTGGATCTAATTATATAATCCCACGCTCTGCTTTAATACAAAAATTTGTGTTCGAGGTAGCCATTGATATTCTGCTAATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGATGGAATTCGTAGATTTCATGAACAAGACACTAAGGTAAGGAAAGAGTTCTACTCTCGGGATATAAAGAAAAAAGTTTCGTATTATTCTAACTATAACTTGTACCATGACAATCCTGCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCCAAACCTGAAGAAATATCATCTGTGTGTAGGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGGTAAAATACTCTGGAATAATTTTTGTCAAATTTTAGAGTATGCATTTTCTCTGTTATTTGTATTAAACATTAAGAATTCAGATACAATCGAAAAACAAAATAAATTTTAACAACCGGTTTTGTC

Coding sequences of Glyma18g35220

Limit To All Plant Sequences

>Glyma18g35220.1   sequence type=CDS   gene model=Glyma18g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGATGGAATTCGTAGATTTCATGAACAAGACACTAAGGTAAGGAAAGAGTTCTACTCTCGGGATATAAAGAAAAAAGTTTCGTATTATTCTAACTATAACTTGTACCATGACAATCCTGCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCCAAACCTGAAGAAATATCATCTGTGTGTAGGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGCTTATCACAAATGACAAGTTTGTCAGTGTGTATCACCGTGTCTTATCACAGAACACAGGCCCAAGAATATCTGTAGCAAGCTTCTTTGTAAATTCGCATGATCCAGCTGAGGGTACATCAAAGGTGTATGGTCCAATTAAGGAACTGCTTTCAGAAGAAAACCCACCAATCTACCGAGACACTACCTTAAAAGAGTTTTTGGCATATTATTATGCAAAGGGCCTTGATGGGAACTCTTCCTTGGGCCCCTTCAGGTTGTGA

>Glyma18g35220.2   sequence type=CDS   gene model=Glyma18g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGATGGAATTCGTAGATTTCATGAACAAGACACTAAGGTAAGGAAAGAGTTCTACTCTCGGGATATAAAGAAAAAAGTTTCGTATTATTCTAACTATAACTTGTACCATGACAATCCTGCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCCAAACCTGAAGAAATATCATCTGTGTGTAGGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGGTAAAATACTCTGGAATAATTTTTGTCAAATTTTAG

Predicted protein sequences of Glyma18g35220

Limit To All Plant Sequences

>Glyma18g35220.1   sequence type=predicted peptide   gene model=Glyma18g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMVFKNTNQLEESMDSTYDRKAEVKAFDDSKAGVKGLVESGLTKIPRMFHSGRLDIIETSVSDSKFGIPIIDLQNIHSYPALHSEVIGKVRSACHDWGFFQVINHGIPISVLDEMIDGIRRFHEQDTKVRKEFYSRDIKKKVSYYSNYNLYHDNPANWRDTFGFVVAPDPPKPEEISSVCRDIVIEYSKKIRDLGFTIFELLSEALGLNPSYLKEFNCGEGLFILGHYYPTCPEPGLTMGTTKHTDSNFMTLLLQDQIGGLQVLHQNQWVNVPPLHGALVVNIGDLLQLITNDKFVSVYHRVLSQNTGPRISVASFFVNSHDPAEGTSKVYGPIKELLSEENPPIYRDTTLKEFLAYYYAKGLDGNSSLGPFRL*

>Glyma18g35220.2   sequence type=predicted peptide   gene model=Glyma18g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMVFKNTNQLEESMDSTYDRKAEVKAFDDSKAGVKGLVESGLTKIPRMFHSGRLDIIETSVSDSKFGIPIIDLQNIHSYPALHSEVIGKVRSACHDWGFFQVINHGIPISVLDEMIDGIRRFHEQDTKVRKEFYSRDIKKKVSYYSNYNLYHDNPANWRDTFGFVVAPDPPKPEEISSVCRDIVIEYSKKIRDLGFTIFELLSEALGLNPSYLKEFNCGEGLFILGHYYPTCPEPGLTMGTTKHTDSNFMTLLLQDQIGGLQVLHQNQWVNVPPLHGALVVNIGDLLQVKYSGIIFVKF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain