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Report for Sequence Feature Glyma18g34568

Feature Type:gene_model
Chromosome:Gm18
Start:40553189
stop:40554282
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62950AT Annotation by Michelle Graham. TAIR10: RNA polymerase II, Rpb4, core protein | chr5:25262447-25263033 REVERSE LENGTH=106 SoyBaseE_val: 1.00E-27ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
PTHR15561Panther CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN JGI ISS
PF03874PFAM RNA polymerase Rpb4 JGI ISS
UniRef100_A8MS47UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II, Rpb4, core protein n=1 Tax=Arabidopsis thaliana RepID=A8MS47_ARATH SoyBaseE_val: 7.00E-25ISS
UniRef100_I1N242UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N242_SOYBN SoyBaseE_val: 2.00E-38ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g34568 not represented in the dataset

Glyma18g34568 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g163800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g34568.1   sequence type=CDS   gene model=Glyma18g34568   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTCCAATCACAGTCTATTCTCACATCATTCAAATGGTTGGACTGGGCACAAAATACATTAAGAGTAAAAAACTTAGAGGGCAATGCTAGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGAGTTATTGCCAAAGTAGCACAGTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCCTCTGTTCAAACAAGAGAGAGCATCAATGAGTTCTTAACAAGTGTTAAATAG

>Glyma18g34568.1   sequence type=predicted peptide   gene model=Glyma18g34568   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFQSQSILTSFKWLDWAQNTLRVKNLEGNASALTNFEVLDFLRAKGASKDPTRVIAKVAQSEYKVYDYLVDTAASVQTRESINEFLTSVK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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