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Report for Sequence Feature Glyma18g34403

Feature Type:gene_model
Chromosome:Gm18
Start:40384216
stop:40385167
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g34403
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28510AT Annotation by Michelle Graham. TAIR10: prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288 SoyBaseE_val: 7.00E-29ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005747GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
PTHR23222Panther PROHIBITIN JGI ISS
UniRef100_I1LKN6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LKN6_SOYBN SoyBaseE_val: 4.00E-36ISS
UniRef100_Q45Q23UniRef Annotation by Michelle Graham. Most informative UniRef hit: PHB2 n=1 Tax=Nicotiana benthamiana RepID=Q45Q23_NICBE SoyBaseE_val: 5.00E-28ISS

Expression Patterns of Glyma18g34403
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g34403 not represented in the dataset
Glyma18g34403 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g34403 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g34403
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g34403
>Glyma18g34403.1   sequence type=CDS   gene model=Glyma18g34403   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACCCTAGTGTCTCATTTCGTGAACCACTTGAGCCCTAGTGTACGTTTCGTGAAACACTATAGCTTCTTCTTCATTATCCTCAAGGTGCCGAATACTGCGCTCCAACAACTGAATACGCCATTGGAGAAACTTGTTTCGATTATCCTGAGAGGACAAGGGCTTGTGATAGAGATCCTTGTTCTGGAACTCGCCGTAGACGTTGTAACAAACAGGATGGCCCTCTCTGTCATGTCTGTGCATGAACACCACCTTCTCCAAGTCATCGCCCAGATCTTCATCCAGAAGGGCGTTGATGTTGAAGTCCTTCCATTTTTCAAAGGCGGTTTTTCAAACCCGTCTCTAACAAACTTGAGGAGAAGTCGGGCTTTAAAAAGGGACCATCCTTCAAGAGAGGGACGCCCCAGATGGAAACGTCCTCTAATTCCTCTTTCAGGAGCTTCTTCAGCTCATCAATGGAATTTTTCTCGGAATCAAAAACCCTATTGCTATTTGGATCTGCAGAATAGTTTCTTGGGTCAACGAGCCATTGTTTTCAACTGTCTAGTTGGTGTCAAAGACAAGGTCTATCCTGAAGGAACTCACTTCTTAATTCCGTGGTTTAAGAGGCCGGTTATCTATGATATCCGTGCACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGGTAAATAATACATGTTGCTAG
Predicted protein sequences of Glyma18g34403
>Glyma18g34403.1   sequence type=predicted peptide   gene model=Glyma18g34403   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTLVSHFVNHLSPSVRFVKHYSFFFIILKVPNTALQQLNTPLEKLVSIILRGQGLVIEILVLELAVDVVTNRMALSVMSVHEHHLLQVIAQIFIQKGVDVEVLPFFKGGFSNPSLTNLRRSRALKRDHPSREGRPRWKRPLIPLSGASSAHQWNFSRNQKPYCYLDLQNSFLGQRAIVFNCLVGVKDKVYPEGTHFLIPWFKRPVIYDIRARPHLVESTSGSRDLQMVNNTCC*






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