Glyma18g34321 - SoyBase

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Report for Sequence Feature Glyma18g34321

Feature Type:	gene_model
Chromosome:	Gm18
Start:	40370519
stop:	40371927
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g34321

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62950	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase II, Rpb4, core protein \| chr5:25262447-25263033 REVERSE LENGTH=106	SoyBase	E_val: 4.00E-32	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
PTHR15561	Panther	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	JGI		ISS
PF03874	PFAM	RNA polymerase Rpb4	JGI		ISS
UniRef100_A8MS47	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II, Rpb4, core protein n=1 Tax=Arabidopsis thaliana RepID=A8MS47_ARATH	SoyBase	E_val: 2.00E-29	ISS
UniRef100_UPI000233F3BF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3BF related cluster n=1 Tax=unknown RepID=UPI000233F3BF	SoyBase	E_val: 9.00E-58	ISS

Expression Patterns of Glyma18g34321

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g34321 not represented in the dataset	Glyma18g34321 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g34321 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g163400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g34321

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g34321

Limit To All Plant Sequences

>Glyma18g34321.1   sequence type=CDS   gene model=Glyma18g34321   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTCAAGGAAGAGCACTGTTCTATTGAGGGCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTCATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGAGTTAATGCCAAAGTAGCGCAGTTTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCTTCAATTCAAACAAGAGAGAGCATCAATGAGTTATTGACAAGTGTTAAACAGCATGACCTGGCAAAAACTGAAGTTCTGAACATATTAAACATTGGACTAGCTGCTGATTTTGAACTATACCCAGTACGTATCAAAATTTTGATTTTCCAATTTATGTTACACATAAGCATTTAG

Predicted protein sequences of Glyma18g34321

Limit To All Plant Sequences

>Glyma18g34321.1   sequence type=predicted peptide   gene model=Glyma18g34321   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLKEEHCSIEGNAGALTNFEVLHFLRAKGASKDPTRVNAKVAQFEYKVYDYLVDTAASIQTRESINELLTSVKQHDLAKTEVLNILNIGLAADFELYPVRIKILIFQFMLHISI*

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