SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03060 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:692188-695424 FORWARD LENGTH=628 | SoyBase | E_val: 3.00E-27 | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PTHR23075 | Panther | PUTATIVE ATP-ASE | JGI | ISS | |
| PF12037 | PFAM | Domain of unknown function (DUF3523) | JGI | ISS | |
| UniRef100_I1LP75 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP75_SOYBN | SoyBase | E_val: 2.00E-27 | ISS |
| UniRef100_Q0WVF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q0WVF7_ARATH | SoyBase | E_val: 2.00E-24 | ISS |
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Glyma18g34100 not represented in the dataset |
Glyma18g34100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g34100.1 sequence type=CDS gene model=Glyma18g34100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCTTGTCTGGGTGTTGTGTGGGCCTGGTTACAGAGGGGGCGATGGTGTGCTTGAATTGGAGATTCGCTGAGGTGTGTTCAGATGTGCTTACAAATTTGAATGCATTTGTTGTGCGAAGGCAGAAAAGTAGTGTCGATTATGATAGCAGAGGAGCTAGCTGTTGGATGTACGTATTTTCTTTTAATGTTGCCTCTAATATGATTGGTAAGGTGATTAACTGTTTGGGTTTCATTTCTTCCTCTTCATCTTTAAGCATTGGTTGCACCACTAAGATGAGCACATCAATATTTTGTCAGGCAGAAAATGAATACCATCGAGCCAGGAACCAAGAACTAGTGAATCTGCAAGAGGAATCATCAATCAGACAGGAGCAAGCTCGACGTGCAACAGAAGAAAAAATTCAAGCTCAAAGAAGGAAAACTGAAAGAGAGAAGCTGAGATTGAACATGAAACAATCAGATAGGCTCTGGCAAAATCATTTAACATTAATTTTTGGAGTGACAAGGGGATTAAGAGCCATTCTAACCGATCAAAATAAGTTGGTTGTAGCAGTTTGTGGAGTGACTGCTCTGGCAGCAGGGAGGGGTCTACACTGCAAGTTTCATAATTTTGTTCATACTGGACCTTTGATGTTTTGCTCATCAGTTGCTGTGAGTGAAATGATGGCTTGTGCTGTTTTATACTCACATTGA
>Glyma18g34100.1 sequence type=predicted peptide gene model=Glyma18g34100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLSGCCVGLVTEGAMVCLNWRFAEVCSDVLTNLNAFVVRRQKSSVDYDSRGASCWMYVFSFNVASNMIGKVINCLGFISSSSSLSIGCTTKMSTSIFCQAENEYHRARNQELVNLQEESSIRQEQARRATEEKIQAQRRKTEREKLRLNMKQSDRLWQNHLTLIFGVTRGLRAILTDQNKLVVAVCGVTALAAGRGLHCKFHNFVHTGPLMFCSSVAVSEMMACAVLYSH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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