Glyma18g33556 - SoyBase

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Report for Sequence Feature Glyma18g33556

Feature Type:	gene_model
Chromosome:	Gm18
Start:	39687666
stop:	39691587
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g33556

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18593	AT	Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase-related \| chr4:10238154-10238698 FORWARD LENGTH=142	SoyBase	E_val: 2.00E-60	ISS
GO:0000188	GO-bp	Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0043405	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0033549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity	SoyBase	N/A	ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PTHR10159:SF129	Panther	MAP KINASE PHOSPHATASE	JGI		ISS
UniRef100_C6TJL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJL3_SOYBN	SoyBase	E_val: 4.00E-91	ISS
UniRef100_O49527	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein - like n=1 Tax=Arabidopsis thaliana RepID=O49527_ARATH	SoyBase	E_val: 4.00E-45	ISS

Expression Patterns of Glyma18g33556

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g33556 not represented in the dataset	Glyma18g33556 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g33556

Paralog	Evidence	Comments
Glyma08g46290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g33556 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g33556

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g33556

Limit To All Plant Sequences

>Glyma18g33556.1   sequence type=CDS   gene model=Glyma18g33556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTTTCCTATCATTGTCACCATCGACACCTCTACCACTTGCACTGCCACCATTCCACCATCATGCCACCATTGGCATAACGACCTCCACCACCAAGCACTACCAATGCACGTTTTATCAATATATCCTTATACCACACAGTGGAACAAACAACATACTCGCTCTCGTTTTAGCCTTGGGTCTTTCTTCTCTTCTCATCGTAGACACTCATTTTTCCTTCCCTCATCACTCAAGCACTCCCACTCTCACCTATTCACTCACCTCATCAACATTGAAACGAAACAGAATAATAAAAAGGAAAAAAAAAAAAGGAGGAGAAAGATCAGAGGAATCAGAAACCAGAGCTATCAGGATCTGCCTCTTTCCTCAGATGAAAGCTTTCATTGTGCATTGATCACAACATCATTTGATTATTCAATACAAATGGCTGAAGCTGGTGGTAGCTCTCAGACGGAAACAACAACCAAACCTCAACTTATATACCGGTGTAAGAAATGCAGAAGAATTGTTGCTTCAGAGGAAAACATAGTTTCCCACGAGCGCGGGAAAGGAGAATCAAGCTTCAAGTGGAAAAAGAGAAGCAGTGAATCCTGGGAAATGGAAAAGCAATCAGTTGATTGCACCTCAGTATTTGTTGAGCCCATGAAATGGATGCAAGCAGTACAAGAAGGTCATGTGGAGGAGAAACTTCTCTGTATGGGTTGTAATGCTCGTTTGGGTTACTTCAACTGGGCCGGTATGCAGTGCAGCTGTGGAGCCTGGGTTAACCCTGCATTTCAGCTGCATAAAAGCAAATTAGATGAGTGCAATATGTAA

Predicted protein sequences of Glyma18g33556

Limit To All Plant Sequences

>Glyma18g33556.1   sequence type=predicted peptide   gene model=Glyma18g33556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFPIIVTIDTSTTCTATIPPSCHHWHNDLHHQALPMHVLSIYPYTTQWNKQHTRSRFSLGSFFSSHRRHSFFLPSSLKHSHSHLFTHLINIETKQNNKKEKKKRRRKIRGIRNQSYQDLPLSSDESFHCALITTSFDYSIQMAEAGGSSQTETTTKPQLIYRCKKCRRIVASEENIVSHERGKGESSFKWKKRSSESWEMEKQSVDCTSVFVEPMKWMQAVQEGHVEEKLLCMGCNARLGYFNWAGMQCSCGAWVNPAFQLHKSKLDECNM*

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