Glyma18g33230 - SoyBase

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Report for Sequence Feature Glyma18g33230

Feature Type:	gene_model
Chromosome:	Gm18
Start:	39237307
stop:	39239310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g33230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25130	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). \| chr3:9152434-9153654 FORWARD LENGTH=406	SoyBase	E_val: 2.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q2R4X3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q2R4X3_ORYSJ	SoyBase	E_val: 7.00E-14	ISS
UniRef100_UPI000233F257	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F257 related cluster n=1 Tax=unknown RepID=UPI000233F257	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g33230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g33230

Paralog	Evidence	Comments
Glyma08g46230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g33230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g159700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g33230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g33230

Limit To All Plant Sequences

>Glyma18g33230.1   sequence type=CDS   gene model=Glyma18g33230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGAGTTATCTTTCTCAAACACTTCCAACAAGAAGAATGAGTTATCTAGTAACCTCTTCTCTATCTTCTTCCACTTCTGTTTCTCCATTTTTTCTCACCCTTTATACTTCTCCTACTTCATCTTCTTCTCCCCTTACCTCCTTAGGATCCTCTCTTTCCTCTCCCCTTTGTTCATCACCACAACCCTTCTTTTAGTTGCCCTTCTCACTTTCACTCCCAACAATCTTGCTCAGGAGAAGTGTGGTTCTGAGCCTTCTGAGTCCAAGTGGGGCATTGTGCTTTCTGTTATGAAATCTTTTCTAGCATGGCTGCATTCCAAAGCTGATGAGATAGATGAAGAAATGGGGCTCCTAGGTGAGGTTGAAGCATATCTTGTCATGTTCCAGGCATCAATCTTTGAAGTGTTTGAGCCTAAGTCAGTGGAAGAATGTTCAGAAGGATTTGAAGCAGTTGATGCTGAGTGCTCAGTTGAAGGAAGAGAAGATTCTTGTGCAGTGGAAGAGCCAAAGCCTAGTGTCAACTTGGACAAAAACCTTCCCTCACAACGTGGTGAACCAACGTTCGAATATCCGTCAAAAGTGTCCACATTTAATGCCCAACAGTGTCTCGAACAAGATTGTCTAGAAAAAAGGATAATTGTGGACGAAAGCCTTCACTCACAACCAAAGTTCGAATCCCCGTTAGAAGAGGTGCCTATATTTAGTGCCCGACAGAGCTTCGAAAAAGATTGCCCCCAAAGGAAGATACCAGTGGAGAGCCAAATAAACATGGATGGAAACCCAGTTGAGAAGGTTGATGAAGTGGAAGCCACTATGCCTATTGTAGAAGTCAAGAGCCTAGAAAGTTTGTTCCAAGAAAATCAAGAGTTGGAAGATTTGTCTTCTCAAAAGGAACACAAAGAAGTGAAGCCACTGATTGCTGAGTTCAATAAAGTTGAAGAAAGTAATGAGAAATGGCCCTTGAGAAGTGGATCCAAAGTGGTGATGGGTTATAGAGACAATAAAGTGAGCACTAACAGTGATGGGGAATTTGCTTTTGCTGCATCCGGGAGGGTGAAGTCCTTATCACAAAGACTAGAAGCAAATATTGGGAGCCCAGAAAGCAACTGGGTGTACAGTGGCAAAGGCATGGGGAATAATAATCACGCACTTGGTAGTTTTGGTTCAATGAGAGTGGAGAAAGAGTGGAGGAGGACCTTGGCTTGTAAGCTTTTTGAGGAGAGGCACAATGCAGATGGGAGTGAAGGAATGGACATGCTTTGGGAGACATATGAGACAGAGTCCAACAACAAGGTTCTGAAGAAGAGCAACACCAAGAAAGGGAAGAAGAAGGGTGAGGTTGAGAATAGTGAGGAGGATGAGGAAGAGGAAGAAGAGGACATGGAGGCTAAGTTGTGCTGCTTACAGGCCTTGAAATTCTCCACAGGGAAGATGAATTTAGGAATGGGGAGGCCTAACCTTCTCAAATTTTCCAAGGCCCTCAAAGGCATTGGGTGGTTGCACCATGTTGGCAAGAATGGCAGAAAGAGTAACCACTGA

Predicted protein sequences of Glyma18g33230

Limit To All Plant Sequences

>Glyma18g33230.1   sequence type=predicted peptide   gene model=Glyma18g33230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTELSFSNTSNKKNELSSNLFSIFFHFCFSIFSHPLYFSYFIFFSPYLLRILSFLSPLFITTTLLLVALLTFTPNNLAQEKCGSEPSESKWGIVLSVMKSFLAWLHSKADEIDEEMGLLGEVEAYLVMFQASIFEVFEPKSVEECSEGFEAVDAECSVEGREDSCAVEEPKPSVNLDKNLPSQRGEPTFEYPSKVSTFNAQQCLEQDCLEKRIIVDESLHSQPKFESPLEEVPIFSARQSFEKDCPQRKIPVESQINMDGNPVEKVDEVEATMPIVEVKSLESLFQENQELEDLSSQKEHKEVKPLIAEFNKVEESNEKWPLRSGSKVVMGYRDNKVSTNSDGEFAFAASGRVKSLSQRLEANIGSPESNWVYSGKGMGNNNHALGSFGSMRVEKEWRRTLACKLFEERHNADGSEGMDMLWETYETESNNKVLKKSNTKKGKKKGEVENSEEDEEEEEEDMEAKLCCLQALKFSTGKMNLGMGRPNLLKFSKALKGIGWLHHVGKNGRKSNH*

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