Glyma18g33191 - SoyBase

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Report for Sequence Feature Glyma18g33191

Feature Type:	gene_model
Chromosome:	Gm18
Start:	39143343
stop:	39145639
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g33191

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G07760	AT	Annotation by Michelle Graham. TAIR10: Zinc knuckle (CCHC-type) family protein \| chr2:3584420-3586278 REVERSE LENGTH=530	SoyBase	E_val: 7.00E-12	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_A2Q500	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endonuclease/exonuclease/phosphatase n=1 Tax=Medicago truncatula RepID=A2Q500_MEDTR	SoyBase	E_val: 2.00E-64	ISS
UniRef100_UPI000233B25C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B25C related cluster n=1 Tax=unknown RepID=UPI000233B25C	SoyBase	E_val: 7.00E-159	ISS

Expression Patterns of Glyma18g33191

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g33191 not represented in the dataset	Glyma18g33191 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g33191 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g159400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g33191

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g33191

Limit To All Plant Sequences

>Glyma18g33191.1   sequence type=CDS   gene model=Glyma18g33191   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTATGTGCCACGGCGGCCGCCCAAAAAAAAAAATCGGTGCCTCCGACACCAAAATCTCTGGTGGTTTCTTCTCCGGTAGATCATTCGGATTCGCGAAGCCACAATGTCAGCAATACTAGATTGATTAATGAAGAAATTGTGGAAATTGAAACACTTGATGAAGATCCAGAAGCTCGGGATGAAGAAATAGTTGATGAGGTTCCTAAGGAATTCGAACCTGAAAAACCTAATCAAGCTGAATCTCAGGACGAAGGTCGAAAACTCTGGGTTGATGTGTTAAAGGATAACAGGAATCTGGCGAAGGGACGAGCAATGAAGTTCATAGCCCCCCAAGTCGTGGATGGGAAAATAGAAGTTTTAATTGAAGACGATGATATCAGATCTGAAGTTAAGTTCTGGGAATCTTCTTTGATTCTGTATGCAATGGGAGCTGATTTAAGTATGAATGCTGTTAAGAATTTTATGACTAGATCTTGGAACTTTGTTCAATTGCCGGACATGTATTTCAATGATGAAGGAAACATTCCTTTGTTGATTCGAGAATGGAGGCCAGGGTTTAAGATCAAGGATGAACTACTGCGAACCCTACCTATTTGGGTGAAACTTCCCCAACTCCCGATCATATTGTGGGGTGATACGAGCTTGAATAAGATTGGGAGTGCCCTGGGTAATCCCATTATGACAGATGAGTGTACTGCAAATAGACTGCGAGTGTCCTATGCGCGTATCCTTGTTGAAATGGATATTACAAATGAGCTTCCTCAAACAATTACCATTGCTGATAATGAAGGAGAAAAGATTCAACAAGCAATTGAGTATGAATGGAGACCTCTATTTTGCAATAAGTGTCAAAAGGTAGGTCATAGCTGTGATAAGCCTAAGGTGAGGAAACAATGGAAACCAAAGCAAGTGAAACAATCTGTGGCTAATGTGGAATTTAAGAAGGAAGAGGTTGATGATAGATGGTCTAATGCAGTGGGAAATGATAATAATGTTAAAGTAAAGACCAGTATGGATATTGCAAGTACCTCTGCTGAGACTCCTTCTCCAGTGGCTGAGGATATCAGAAACAAGGATGTTGAAGCAGTTGTGGAAAAATGGATTGAGGTAATTAGAAGTGGTAGAGAAAGAGGAAAAAAGAAAGTTAATGATAGTTCTACAGGTTCAGTCTTATGTGATAATGGGGGGCTGAATAAAATGGGGAAGTTAAGGGAGACTAGCTCCCGTCTCCTTAACCTTCACCCCAAAATTGCAATTCTGTTAGAAACTAGAGTAAAGTGTGATAAAGCTAAGAAAGTTAGAGACTATCTTAACCTCAGAGGTAAGTACCTTGACAACTATCAAGCTCATTATAATGGCAGGATCTGGATTTTTTGGGATGACAGTTATAAGGACATCAGACTGGTGAAGTGTACATCTCAGATGATACACTGTGGAGTCTATGATGTTAATGGTAATTTCCAAAACTGGATGACAGCCATCTATGCTATGAATCAGCTGGACCAAAGAAGGAAGTTGTGGGAGGACTTGGAGCACATTCATAATAGCCAACAAGGGCCATGGTTCCTTATGGGTGATTTTAACAACTTGACAAAGTCCATGGATAGGGTTGGGGGAAACTTGGTGACTGAGAGAGAGTATGTAGATCTCAGGAATTTGATGGATCATGCTGGGCTTTTTGAGAAGGATAGTACAGGGGAATATTTTACTTGGACAAATAAACATTCTATAGGTACTATCTAG

Predicted protein sequences of Glyma18g33191

Limit To All Plant Sequences

>Glyma18g33191.1   sequence type=predicted peptide   gene model=Glyma18g33191   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLCATAAAQKKKSVPPTPKSLVVSSPVDHSDSRSHNVSNTRLINEEIVEIETLDEDPEARDEEIVDEVPKEFEPEKPNQAESQDEGRKLWVDVLKDNRNLAKGRAMKFIAPQVVDGKIEVLIEDDDIRSEVKFWESSLILYAMGADLSMNAVKNFMTRSWNFVQLPDMYFNDEGNIPLLIREWRPGFKIKDELLRTLPIWVKLPQLPIILWGDTSLNKIGSALGNPIMTDECTANRLRVSYARILVEMDITNELPQTITIADNEGEKIQQAIEYEWRPLFCNKCQKVGHSCDKPKVRKQWKPKQVKQSVANVEFKKEEVDDRWSNAVGNDNNVKVKTSMDIASTSAETPSPVAEDIRNKDVEAVVEKWIEVIRSGRERGKKKVNDSSTGSVLCDNGGLNKMGKLRETSSRLLNLHPKIAILLETRVKCDKAKKVRDYLNLRGKYLDNYQAHYNGRIWIFWDDSYKDIRLVKCTSQMIHCGVYDVNGNFQNWMTAIYAMNQLDQRRKLWEDLEHIHNSQQGPWFLMGDFNNLTKSMDRVGGNLVTEREYVDLRNLMDHAGLFEKDSTGEYFTWTNKHSIGTI*

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