Glyma18g33025 - SoyBase

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Report for Sequence Feature Glyma18g33025

Feature Type:	gene_model
Chromosome:	Gm18
Start:	38480500
stop:	38485304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g33025

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07270	AT	Annotation by Michelle Graham. TAIR10: GTP cyclohydrolase I \| chr3:2315451-2317059 FORWARD LENGTH=466	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0046654	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003934	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP cyclohydrolase I activity	SoyBase	N/A	ISS
KOG2698	KOG	GTP cyclohydrolase I	JGI		ISS
PTHR11109	Panther	GTP CYCLOHYDROLASE I	JGI		ISS
PF01227	PFAM	GTP cyclohydrolase I	JGI		ISS
UniRef100_G7L058	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP cyclohydrolase I n=1 Tax=Medicago truncatula RepID=G7L058_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZ27	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZ27_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g33025

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g33025 not represented in the dataset	Glyma18g33025 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g33025

Paralog	Evidence	Comments
Glyma08g46160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g33025 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g158900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g33025

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g33025

Limit To All Plant Sequences

>Glyma18g33025.1   sequence type=CDS   gene model=Glyma18g33025   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGTGTGATTGATGGGCGTTTCACTGTTGAGATTCAAAATGGAGTGAGCAATGGTTGTGGTGAAGTGGGTTTGTGGAATGATGGTGGTGGTGCCATTGAGGATGCTGTGAAGGTTTTGTTGGAGGGTCTAGGGGAAGATGTGAACAGGGAAGGCCTTAGAAAGACACCACTTCGTGTAGCCAAGGCCCTTCATGAAGGAACCAGAGGTTACAGACAAAAGGTGAACGACATTGTTCAAGGTGCTTTATTCCCTGAAGCTGGTCTAGATAATAGAGTTGGTCATGCAGGTGGAGCAGGTGGACTTGTGATTGTTCGAGATCTTGACTTGTTTTCCTATTGCGAGTCCTGCTTGCTTCCATTCCCGGTCAAGTGTCATGTGGGTTATGTCCCCTCTGGTGAAAGAGTTGTTGGTTTAAGCAAGCTCTCTCGTGTTGCTGATGTATTTGCAAAACGACTTCAAGAGCCTCAGCGTCTGGCAGATGAGGTGTGTTCTGCTTTACATCAGGGAATAAGGCCAGCAGGTGTTGCTATCATACTTCAATGTTCACATATCCACTTTCCAGACATAGAATCAGTCTTTCTTGACTCAAATTATCAAGGGTGGGTGAAGATACTTGTTTCTTCAGGTTCTGGGGTTTTTGAGAACAAAAATGCAGATGTATGGGCTGATTTCTTTGGTCTTCTTAAATTTAGAGGCATCAATATGGATAAAATTCATTTTAGAGGATCATCTGATCCATGCTGGTGTCCTTCTCAGTCTTCTCTCTCTGCCAAAGTTTCCTCCAAAATAGGACCAGTCAATCCTGTAATGGTTACTGCAGTAGCTTCAGTTATTGAATCTTTGGGAGAAAATCCTTTGAGGAAGGAGCTTATAGGGACTCCAACTAGATTTGTGAAATGGTTGATGAACTTTCAAAAGAGTAACTTTAATATCAAGTTGAATGGTTTTCTTTGTGATGGGATAGATTCTTTAAATGTCAATGAGGATGTTAACATCAACAAAAAAATAACCTCTGAGTTGAACATACCTTTTTGGTCACAATGTGAGCATCATTTGCTTCCTTTTCATGGTGTTGTTCACATAGGATACCTTATGTCTGACGGATTCAATCCTATCTTAAAATCGCTTTTACAATCAATTGTACATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACCAGGCAGATAGCTGAAACCATTGCCCCACTGTTAGGTGGAGATGTGATAGTAGTTGTAGAGGCAAGCCACACGTGTATGATTTCGAGGGGAATTGAGAAGTTTGGAAGTAGTACGGCTACTATTGGTGTGTTAGGACATTTTTCAACCGACCCTACTGCAAGGGCATCATTCTTGAAGAGTATTCCATATCCTACATCATCTGGGGAGCAATGA

Predicted protein sequences of Glyma18g33025

Limit To All Plant Sequences

>Glyma18g33025.1   sequence type=predicted peptide   gene model=Glyma18g33025   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCVIDGRFTVEIQNGVSNGCGEVGLWNDGGGAIEDAVKVLLEGLGEDVNREGLRKTPLRVAKALHEGTRGYRQKVNDIVQGALFPEAGLDNRVGHAGGAGGLVIVRDLDLFSYCESCLLPFPVKCHVGYVPSGERVVGLSKLSRVADVFAKRLQEPQRLADEVCSALHQGIRPAGVAIILQCSHIHFPDIESVFLDSNYQGWVKILVSSGSGVFENKNADVWADFFGLLKFRGINMDKIHFRGSSDPCWCPSQSSLSAKVSSKIGPVNPVMVTAVASVIESLGENPLRKELIGTPTRFVKWLMNFQKSNFNIKLNGFLCDGIDSLNVNEDVNINKKITSELNIPFWSQCEHHLLPFHGVVHIGYLMSDGFNPILKSLLQSIVHFYGFKLQVQERLTRQIAETIAPLLGGDVIVVVEASHTCMISRGIEKFGSSTATIGVLGHFSTDPTARASFLKSIPYPTSSGEQ*

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