Glyma18g32850 - SoyBase

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Report for Sequence Feature Glyma18g32850

Feature Type:	gene_model
Chromosome:	Gm18
Start:	38322959
stop:	38329091
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g32850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07310	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF760) \| chr3:2328057-2329677 REVERSE LENGTH=368	SoyBase	E_val: 8.00E-115	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05542	PFAM	Protein of unknown function (DUF760)	JGI		ISS
UniRef100_I1N1Z1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1Z1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S7A6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F21O3.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S7A6_ARATH	SoyBase	E_val: 4.00E-112	ISS

Expression Patterns of Glyma18g32850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g32850

Paralog	Evidence	Comments
Glyma08g46120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g32850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g158300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g32850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g32850

Limit To All Plant Sequences

>Glyma18g32850.2   sequence type=transcript   gene model=Glyma18g32850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGATAGATTAACTAGGAATTTCTGCCTTTATATAGAGTTTTTCGCTTGAGATATATCTAGAGTACATATCAATCTCAACTAGTTCTGATCATCTCCACATATTACATAGAGCATCAACTTATCTACAAAACTCATTCATAACTAAAATCCTTCCATTCCTTCCACAAAAGTCTCAAACAACAAACCCTATCCTCTTACCAGACAAACCTCCTTTTCACGCTTTTCTGTTACTTTGCAGCATACCACTTCACTCATCACAAACCAACCTTTATCATTCTTTATTCTCCCTCACCAAACAAACCCAATAGAGAAAGGAAAAGTTTTTTTCATTTGGGTCACCCTACACAACACAACACAACCTTGCTGAATGGAAAACTGTGTCTTCCACCACCACCTTAGGAGCATGATCACTCTTCCACAACCACCATCAACACCATTGTTCCCCAAAGTTATGAGGGTGAGAGCGAGCGCGGGAAGGAGGCACTGCGAGTTCAGCAGCCAGAACGCGCCCCTTGAGCCACGGTCCCTTGTGGGGAAGTTTCTGAGCGGCGTGTTGCAGAACCGCCGCCAGCTGTTCCACGTGGTTGCCAAAGAAGAGTTGAAGATGCTGAGTGATGACAGAGACTCTGCTCTTGCTCGCATGCATCTCAGTCAGCACTCTGATGAAGCCTTGCTTCACAGGAGAATTGCGCAAGTGAAAGAGAATGAGTCTATGATTGCTATAGCGGATGTTATGTATTTGCTGATTTTATACAAGTTTTCTGAGATCAGGGTTAATTTGGTTCCAAAGCTTTCTAGTTGCCTATATGACGGAAGGCTAGAAATATTGCCCTCTAAGGACTGGGATCTAGAGTCTATTCACAGCTTGGAGGTTTTGGATATCATAAGGAAACATGTCAGTACTGTGACAGGTTTGAGATCAAATCCTAGTGTAAGGGAGAGTTGGGAAACAACTCCTATTCGACAAGTCTGGCTTGCCCGAGTCTATGTTGCCTCCATATTATATGGTTACTTTTTGAAGTCAGTTTCATTGAGGTACAACCTAGAGCGAAGTCTGTCTTTGTCTGACCATGATTTTCATCATGGTCATAAGATCGGCCCTTCATTTCATGACATGTATCATTCCGGGGCAAAAGATGTGATGTTTGGCAACAAGAGTGACATACAATCTGTATGGCATGGCTTAATTGGGCAGGAAGAGGAAATCGAGGATTTAAAATGTTATGTTACTGGCTTTCACCCTGGATCATTTGAGAGATGTGCCAAACTGAGATCCAAGGAAGCTGTGCATTTGGTAGAGAGTCATAGTAATGCACTCTTTGGAGATGGGAAATCTGGTTTGTCTCAGCATGATGATATTATTGTAACTTCATTTTCTAGTCTGAGGAGGCTAGTCTTGGAAGCTGTTGCATTTGGATCTTTCCTGTGGGAGACAGAAGATTACATTGACAGTGTATATAAGCTTAAAGATCAAGAGGTAGAGTGAAGGAACATGTTGCTAGGTAAATAAATTTCTACACTCGGACCAATTCTCATTGTATATAAAGTTAGTTAGATTTAGGCAAATTTATCTTGTATAGGATGCATTACCTCTAAATAATTTATAGTTTTAATGCGGTTGGTTAGCTAAGAAAGAATGAGATTTTAAATAGTGACAAAGAATGTCCTTATGAAAAAATATTTTACTTGTTCATTAGCACATAATTCCAATTATGTTTGAACTTGTTCAGTTAAACCAGAGGATACTATTTCTTTTAAGGCAGTTTATGTTGCCATGGCTGCAAATATGCTATAAATTTGCAGCCTTGTTACCTACGGGGAGTTACTGAAGCCTGAGACTTGCGGTCATGATCCATTTCTTCAACATTCCGTGTTGGTTATAAACTAATCAGTGTTTCAATAAAATCATTAAAAAACATTTTAGGTAAAGATGAGGGATTTGTTTACATTAGATTAAAG

Coding sequences of Glyma18g32850

Limit To All Plant Sequences

>Glyma18g32850.1   sequence type=CDS   gene model=Glyma18g32850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACTGTGTCTTCCACCACCACCTTAGGAGCATGATCACTCTTCCACAACCACCATCAACACCATTGTTCCCCAAAGTTATGAGGGTGAGAGCGAGCGCGGGAAGGAGGCACTGCGAGTTCAGCAGCCAGAACGCGCCCCTTGAGCCACGGTCCCTTGTGGGGAAGTTTCTGAGCGGCGTGTTGCAGAACCGCCGCCAGCTGTTCCACGTGGTTGCCAAAGAAGAGTTGAAGATGCTGAGTGATGACAGAGACTCTGCTCTTGCTCGCATGCATCTCAGTCAGCACTCTGATGAAGCCTTGCTTCACAGGAGAATTGCGCAAGTGAAAGAGAATGAGTCTATGATTGCTATAGCGGATGTTATGTATTTGCTGATTTTATACAAGTTTTCTGAGATCAGGGTTAATTTGGTTCCAAAGCTTTCTAGTTGCCTATATGACGGAAGGCTAGAAATATTGCCCTCTAAGGACTGGGATCTAGAGTCTATTCACAGCTTGGAGGTTTTGGATATCATAAGGAAACATGTCAGTACTGTGACAGGTTTGAGATCAAATCCTAGTGTAAGGGAGAGTTGGGAAACAACTCCTATTCGACAAGTCTGGCTTGCCCGAGTCTATGTTGCCTCCATATTATATGGTTACTTTTTGAAGTCAGTTTCATTGAGGTACAACCTAGAGCGAAGTCTGTCTTTGTCTGACCATGATTTTCATCATGGTCATAAGATCGGCCCTTCATTTCATGACATGTATCATTCCGGGGCAAAAGATGTGATGTTTGGCAACAAGAGTGACATACAATCTGTATGGCATGGCTTAATTGGGCAGGAAGAGGAAATCGAGGATTTAAAATGTTATGTTACTGGCTTTCACCCTGGATCATTTGAGAGATGTGCCAAACTGAGATCCAAGGAAGCTGTGCATTTGGTAGAGAGTCATAGTAATGCACTCTTTGGAGATGGGAAATCTGGTTTGTCTCAGCATGATGATATTATTGTAACTTCATTTTCTAGTCTGAGGAGGCTAGTCTTGGAAGCTGTTGCATTTGGATCTTTCCTGTGGGAGACAGAAGATTACATTGACAGTGTATATAAGCTTAAAGATCAAGAGGTAGAGTGA

>Glyma18g32850.2   sequence type=CDS   gene model=Glyma18g32850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACTGTGTCTTCCACCACCACCTTAGGAGCATGATCACTCTTCCACAACCACCATCAACACCATTGTTCCCCAAAGTTATGAGGGTGAGAGCGAGCGCGGGAAGGAGGCACTGCGAGTTCAGCAGCCAGAACGCGCCCCTTGAGCCACGGTCCCTTGTGGGGAAGTTTCTGAGCGGCGTGTTGCAGAACCGCCGCCAGCTGTTCCACGTGGTTGCCAAAGAAGAGTTGAAGATGCTGAGTGATGACAGAGACTCTGCTCTTGCTCGCATGCATCTCAGTCAGCACTCTGATGAAGCCTTGCTTCACAGGAGAATTGCGCAAGTGAAAGAGAATGAGTCTATGATTGCTATAGCGGATGTTATGTATTTGCTGATTTTATACAAGTTTTCTGAGATCAGGGTTAATTTGGTTCCAAAGCTTTCTAGTTGCCTATATGACGGAAGGCTAGAAATATTGCCCTCTAAGGACTGGGATCTAGAGTCTATTCACAGCTTGGAGGTTTTGGATATCATAAGGAAACATGTCAGTACTGTGACAGGTTTGAGATCAAATCCTAGTGTAAGGGAGAGTTGGGAAACAACTCCTATTCGACAAGTCTGGCTTGCCCGAGTCTATGTTGCCTCCATATTATATGGTTACTTTTTGAAGTCAGTTTCATTGAGGTACAACCTAGAGCGAAGTCTGTCTTTGTCTGACCATGATTTTCATCATGGTCATAAGATCGGCCCTTCATTTCATGACATGTATCATTCCGGGGCAAAAGATGTGATGTTTGGCAACAAGAGTGACATACAATCTGTATGGCATGGCTTAATTGGGCAGGAAGAGGAAATCGAGGATTTAAAATGTTATGTTACTGGCTTTCACCCTGGATCATTTGAGAGATGTGCCAAACTGAGATCCAAGGAAGCTGTGCATTTGGTAGAGAGTCATAGTAATGCACTCTTTGGAGATGGGAAATCTGGTTTGTCTCAGCATGATGATATTATTGTAACTTCATTTTCTAGTCTGAGGAGGCTAGTCTTGGAAGCTGTTGCATTTGGATCTTTCCTGTGGGAGACAGAAGATTACATTGACAGTGTATATAAGCTTAAAGATCAAGAGGTAGAGTGA

Predicted protein sequences of Glyma18g32850

Limit To All Plant Sequences

>Glyma18g32850.1   sequence type=predicted peptide   gene model=Glyma18g32850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENCVFHHHLRSMITLPQPPSTPLFPKVMRVRASAGRRHCEFSSQNAPLEPRSLVGKFLSGVLQNRRQLFHVVAKEELKMLSDDRDSALARMHLSQHSDEALLHRRIAQVKENESMIAIADVMYLLILYKFSEIRVNLVPKLSSCLYDGRLEILPSKDWDLESIHSLEVLDIIRKHVSTVTGLRSNPSVRESWETTPIRQVWLARVYVASILYGYFLKSVSLRYNLERSLSLSDHDFHHGHKIGPSFHDMYHSGAKDVMFGNKSDIQSVWHGLIGQEEEIEDLKCYVTGFHPGSFERCAKLRSKEAVHLVESHSNALFGDGKSGLSQHDDIIVTSFSSLRRLVLEAVAFGSFLWETEDYIDSVYKLKDQEVE*

>Glyma18g32850.2   sequence type=predicted peptide   gene model=Glyma18g32850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENCVFHHHLRSMITLPQPPSTPLFPKVMRVRASAGRRHCEFSSQNAPLEPRSLVGKFLSGVLQNRRQLFHVVAKEELKMLSDDRDSALARMHLSQHSDEALLHRRIAQVKENESMIAIADVMYLLILYKFSEIRVNLVPKLSSCLYDGRLEILPSKDWDLESIHSLEVLDIIRKHVSTVTGLRSNPSVRESWETTPIRQVWLARVYVASILYGYFLKSVSLRYNLERSLSLSDHDFHHGHKIGPSFHDMYHSGAKDVMFGNKSDIQSVWHGLIGQEEEIEDLKCYVTGFHPGSFERCAKLRSKEAVHLVESHSNALFGDGKSGLSQHDDIIVTSFSSLRRLVLEAVAFGSFLWETEDYIDSVYKLKDQEVE*

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