Glyma18g32840 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g32840

Feature Type:	gene_model
Chromosome:	Gm18
Start:	38273414
stop:	38276451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g32840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07320	AT	Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein \| chr3:2332324-2333925 REVERSE LENGTH=460	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_G7LF67	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-1 3-glucanase n=1 Tax=Medicago truncatula RepID=G7LF67_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N1Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1Z0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g32840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g32840

Paralog	Evidence	Comments
Glyma08g46110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g32840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g158200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g32840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g32840

Limit To All Plant Sequences

>Glyma18g32840.1   sequence type=CDS   gene model=Glyma18g32840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGCTTCTTCTCATTCCACTGTTCCTATCATCCATTTTACTATTCCCAATATCAAGCGCAACAACGTTCTCACCCCAACCCGGAATCTGCTACGGCCAGCTCGGAGACAACCTTCCACCGCCGCGAGAATCTGTCTCCCTCATAACCTCCGTCCATGCGAAGCGCGTGAAGCTCTACGACGCGAACCCATCCATCCTCCACGCGCTTCAAGACACGCGCCTGCAAGTTTCCATCATGGTCCCCAACGACCTCATCTTGAACATCTCCACGAACCAAACCCTGTCCGACCAGTGGGTCTCCGACAACGTCGTACCCTACCACCCCCGCACCCTCATCCGCTACCTCCTCGTCGGCAACGAAGTCACCAGCACCACCGCGGCCACCGCCACGTGGCCCCACCTGGTCCCCGCCATGCGCCGCATCAAACGCTCACTGAAATCCCACGGGATCCGCAAAATCAAAGTCGGAACCTCATCCGCTATGGACGTGCTTCAAACCTCGTTCCCTCCCTCAAACGGTGCGTTTCGCAAAGACCTAACTGCCCCCGTCATGAAACCCATGTTAAAATTCCTCAACCGGACCAAATCGTTTTTCTTCTTAGACGTGTACCCTTTCTTCACTTGGTCCGCTGACCCCTTGAATATAAACCTTGATTACGCTTTATTTGAATCCAAAACTGTAACCGTTAAGGATCCGGTTTCGGGTTTGGTTTACACTAACCTGTTTGACCAAATGGTGGACGCGGTTTATTTTGCGATGAAGAGATTAGGTTTTCCGGGTGTTCGGATCTTTATCGCGGAAACGGGTTGGCCCAATGGAGGCGACTTGGACCAGATTGGAGCAAATACTTACAACGCTGCCACTTACAACCGAAACTTCATAAAGAAAGTCACTAAAAAACCGCGGGTGGGGACACCGGCTCGACCGGGTTCGGCTCTTCCGTCTTTTTTATTCGCCCTCTTCAATGAGAATCAGAAACCGGGTCCGAGTACGGAGCGGCATTTCGGGTTGTTGCACCCGAACGGGTCGAGGGTTTACGACGTGGATTTGTCCGGGGAAACGCCGGAGGCGGAGTTCCGGCCGCTTCCGGTGCCGGAGAATAATGAAAAGTTTAAGGGGAGGATATGGTGCGTGGCGGCGCGCCGGGATAACGCGACGGCGCTGACGGCGGCGCTTGCGTACGCGTGCTCGCAGGGGAATGGCACGTGCGACCCGATCCAATCGAAGGGGAAGTGTTTTAAACCCGATTCGGTTTTCTGGCACGCGAGCTATGCGTTTAGTGCTTATTGGGCGCAGTTTAGGAAGGTTGGCGGAACTTGTTACTTCAATGGGCTTGCAACTCAAACCGCAAAGGATCCAAGTTATGGATCCTGCAAGTTCCCTAGCGTGACACTTTGA

Predicted protein sequences of Glyma18g32840

Limit To All Plant Sequences

>Glyma18g32840.1   sequence type=predicted peptide   gene model=Glyma18g32840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMLLLIPLFLSSILLFPISSATTFSPQPGICYGQLGDNLPPPRESVSLITSVHAKRVKLYDANPSILHALQDTRLQVSIMVPNDLILNISTNQTLSDQWVSDNVVPYHPRTLIRYLLVGNEVTSTTAATATWPHLVPAMRRIKRSLKSHGIRKIKVGTSSAMDVLQTSFPPSNGAFRKDLTAPVMKPMLKFLNRTKSFFFLDVYPFFTWSADPLNINLDYALFESKTVTVKDPVSGLVYTNLFDQMVDAVYFAMKRLGFPGVRIFIAETGWPNGGDLDQIGANTYNAATYNRNFIKKVTKKPRVGTPARPGSALPSFLFALFNENQKPGPSTERHFGLLHPNGSRVYDVDLSGETPEAEFRPLPVPENNEKFKGRIWCVAARRDNATALTAALAYACSQGNGTCDPIQSKGKCFKPDSVFWHASYAFSAYWAQFRKVGGTCYFNGLATQTAKDPSYGSCKFPSVTL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain