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Report for Sequence Feature Glyma18g32830

Feature Type:gene_model
Chromosome:Gm18
Start:38247220
stop:38252023
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g32830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25230AT Annotation by Michelle Graham. TAIR10: rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551 SoyBaseE_val: 0ISS
GO:0000413GO-bp Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0018208GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0070370GO-bp Annotation by Michelle Graham. GO Biological Process: cellular heat acclimation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0005528GO-mf Annotation by Michelle Graham. GO Molecular Function: FK506 binding SoyBaseN/AISS
KOG0543 KOG FKBP-type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR10516Panther FK506 BINDING PROTEIN JGI ISS
PTHR10516:SF66Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI ISS
PF00254PFAM FKBP-type peptidyl-prolyl cis-trans isomerase JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_B9TA12UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidylprolyl isomerase, putative n=1 Tax=Ricinus communis RepID=B9TA12_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233ECA3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ECA3 related cluster n=1 Tax=unknown RepID=UPI000233ECA3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g32830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g32830
ParalogEvidenceComments
Glyma08g46090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g32830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g158100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g32830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g32830
>Glyma18g32830.1   sequence type=CDS   gene model=Glyma18g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGACTTCGACATCCCCGGCGGCGAGGAAATGGATCTCGGCGAAGACGAGGTCGGCGAGGAGAGGGAGATCGGCTCTGGCGGCCTCAAGAAGAAGCTCCTCAAGGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGTGACGAAGTCCAAGTTCATTACACGGGGACTTTGCTCGACGGGACTAAGTTCGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCTACTATTCCTCCTAATGCTACACTCCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAATTACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGGGAGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCAGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGTGAAACTAATTGGTAAGCTACAAGATGGTACCGCTTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCGTTGTTGACCATTGCACCTGATTATGCTTTCGGTACATCAGAGTCCCAACAGGAGTTGGCTGTAGTTCCTCCTAACTCAACCGTGTATTTTGAAGTTGAGCTAGTGTCATTTGAGAAAGAGAAGGAGTCCTGGGATCTGAACACTGAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAGGGAAATGTCTTGTTTAAAGCTAGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCCGTGAAGTACATAGAATATGATTCCTCCTTTGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAAGAAGCAGAGAAATTGTGTACTAAGGTGTTGGACCTTGAGAGTACAAATGTGAAAGCCCTCTATAGAAGGGCCCAAGCACATATGCAGTTGACTAACTTGGATTTGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGA
Predicted protein sequences of Glyma18g32830
>Glyma18g32830.1   sequence type=predicted peptide   gene model=Glyma18g32830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDFDIPGGEEMDLGEDEVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYEVHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQQELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASKRYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAHMQLTNLDLAELDIKKALDIDPNNRDVKLEYRTLKEKVKENNRKEAQFYGNMINKMTKIGS*






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