SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27120 | AT | Annotation by Michelle Graham. TAIR10: DNA polymerase epsilon catalytic subunit | chr2:11581223-11594346 FORWARD LENGTH=2138 | SoyBase | E_val: 9.00E-101 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10670 | Panther | DNA POLYMERASE EPSILON, CATALYTIC SUBUNIT | JGI | ISS | |
| PF00136 | PFAM | DNA polymerase family B | JGI | ISS | |
| PF07731 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_I1LMZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Glycine max RepID=I1LMZ5_SOYBN | SoyBase | E_val: 2.00E-110 | ISS |
| UniRef100_UPI000233B0F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0F5 related cluster n=1 Tax=unknown RepID=UPI000233B0F5 | SoyBase | E_val: 1.00E-157 | ISS |
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Glyma18g32696 not represented in the dataset |
Glyma18g32696 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g157400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g32696.2 sequence type=transcript gene model=Glyma18g32696 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAATGCATCAACAGCAACTATTGATGGGTTATCTCGCTACTCTGTCAACAATGTGTCTTACTTGATCCCAGATATACCACTGAAACTAGCTTATTTCTTTTCCAATAGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTATCTAGTGCATTACTTAAAGGTTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGGTATAATGTGAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAAATTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAATATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGATCCAATCAGGAAAACGTATACAACTCGCAGTGAATGCTCTATCGAATTTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGTTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGTTAGTCATGTTAAAACCTCC
>Glyma18g32696.1 sequence type=CDS gene model=Glyma18g32696 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAATGCATCAACAGCAACTATTGATGGGTTATCTCGCTACTCTGTCAACAATGTGTCTTACTTGATCCCAGATATACCACTGAAACTAGCTTATTTCTTTTCCAATAGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTATCTAGTGCATTACTTAAAGGTTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGGTATAATGTGAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAAATTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAATATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACGTATACAACTCGCAGTGAATGCTCTATCGAATTTTAG >Glyma18g32696.2 sequence type=CDS gene model=Glyma18g32696 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAATGCATCAACAGCAACTATTGATGGGTTATCTCGCTACTCTGTCAACAATGTGTCTTACTTGATCCCAGATATACCACTGAAACTAGCTTATTTCTTTTCCAATAGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTATCTAGTGCATTACTTAAAGGTTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGGTATAATGTGAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAAATTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAATATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGATCCAATCAGGAAAACGTATACAACTCGCAGTGAATGCTCTATCGAATTTTAGGTGA
>Glyma18g32696.1 sequence type=predicted peptide gene model=Glyma18g32696 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFHVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDIPLKLAYFFSNRTGVYELDAFSKNTSNANAVRGVFVSSALLKGWTEIVLENNLDIIDTWHLDGYSFFVVGYNVSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQIAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGANIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQTLTDPIRKTYTTRSECSIEF* >Glyma18g32696.2 sequence type=predicted peptide gene model=Glyma18g32696 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFHVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDIPLKLAYFFSNRTGVYELDAFSKNTSNANAVRGVFVSSALLKGWTEIVLENNLDIIDTWHLDGYSFFVVGYNVSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQIAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGANIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQIQSGKRIQLAVNALSNFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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