SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17000 | AT | Annotation by Michelle Graham. TAIR10: Zinc-binding dehydrogenase family protein | chr5:5584983-5586991 REVERSE LENGTH=345 | SoyBase | E_val: 6.00E-37 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF5 | Panther | BENZYLALCOHOL DEHYDROGENASE | JGI | ISS | |
| UniRef100_C6TD43 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TD43_SOYBN | SoyBase | E_val: 3.00E-45 | ISS |
| UniRef100_G7ZVT0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Quinone oxidoreductase-like protein n=1 Tax=Medicago truncatula RepID=G7ZVT0_MEDTR | SoyBase | E_val: 4.00E-44 | ISS |
|
Glyma18g32641 not represented in the dataset |
Glyma18g32641 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g157100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g32641.1 sequence type=CDS gene model=Glyma18g32641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATAGTTGAAACTGTCACAACTTTGAGGAACAAGCAAGTGGTTCTAAGGAACTATGTCACTGGTTTTCCCAAAGAATCTTTAGACATGAAGATAGTTGAAACTATCACAACTTTGAAGCTTCCTAAAGATCCTAATGAGGTTCTCCTAAAAAATTTGTACCTGTCTTATGATGCTTACATGCAAATCCTCATGACAAAAGACCGTCTTGTCCAAGTTGGTCCCTACGCCCTTGGCCGTCTGTTGTATCATGCAGATGGTGTATTAAGAAAATTGAATTTTGTAATTGGTTTGAGCATTTCCAATTTCAAAGTTCTAGAATCTAGACATCTAGATTATAAGAAAGGGGATTTAGTATGGGGGATTACTAAATGGGAAGAGTATAGCTTGATACCCTTAGCTCAAATACGTTTCAAAATTGAGCACATTAATGTCCCACTTTCCTACTATACTGGAATTCTTTGGACCATCTGTTTGTTGGGATGTGACCCTCGCTTGACCACTTCGAGGTACTTGACACCCATCGTTAGGCAATCCGTGAAGTTTCGTGACATGTCGGGAGTTGAAAGGAAGTGTTAA
>Glyma18g32641.1 sequence type=predicted peptide gene model=Glyma18g32641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIVETVTTLRNKQVVLRNYVTGFPKESLDMKIVETITTLKLPKDPNEVLLKNLYLSYDAYMQILMTKDRLVQVGPYALGRLLYHADGVLRKLNFVIGLSISNFKVLESRHLDYKKGDLVWGITKWEEYSLIPLAQIRFKIEHINVPLSYYTGILWTICLLGCDPRLTTSRYLTPIVRQSVKFRDMSGVERKC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
