Glyma18g32620 - SoyBase

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Report for Sequence Feature Glyma18g32620

Feature Type:	gene_model
Chromosome:	Gm18
Start:	37881564
stop:	37884503
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g32620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04020	AT	Annotation by Michelle Graham. TAIR10: calmodulin binding \| chr5:1081980-1086546 REVERSE LENGTH=1495	SoyBase	E_val: 1.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_G7KRQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pathogen-induced calmodulin-binding protein n=1 Tax=Medicago truncatula RepID=G7KRQ7_MEDTR	SoyBase	E_val: 3.00E-106	ISS
UniRef100_UPI00023379AA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023379AA related cluster n=1 Tax=unknown RepID=UPI00023379AA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g32620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g32620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U005700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g32620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g32620

Limit To All Plant Sequences

>Glyma18g32620.2   sequence type=CDS   gene model=Glyma18g32620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGGCTACACCCTTGGTGGTGCACTATCAATGCTACCAGCCATCTCAAAGAAAATAAGGATGCAATTGAGCTGGTGCAGAAAGCATTTGATGAAATCCTTCTTCCAGAGCCTGAAGACCTCTTTTCTGATGATCAATTCAAATCTGAAGGCATTGATTCAGGTGAGGTACACTTAGAAAAGAGTGAAGTTGAGAGAAAAAGGAATACTTCAACATCCACAGAATCTCCAACAGCACAGAGGATGGGGACCAAACCTGACCAAAGAGCACCAAGAAGCTGGAGCAATCTGAAGAAGTTAATCCTCTTGAAAAGGTTTGTGAATGCATTAGAGAAGGTAAGAAACATCAACCCCAAAAGACCAAGACGTTTTCCTTCTGATGCTAACTTAGAAATAGAAAAAGTTTTTCTCAAGCACCAAACAGCGGGAGAGAAGAATAATGCTGAGGAATGGATGCTTGACTATGCACTTCAAAAGGTTGTTTCTAAACTTGCACCTGCTCAAAGACAAAAAGTGACACTTCTAGTAAAAGCTTTTGAAACAATTCTGCCATTTCAAGTTGCTGAAAATAGTCCACGGTTTTCTCCAACAATGGAACCTCAAGCAAATCCAGTTCAACCCCTTGACAATTCCTCAAATCACAGCGAGGAAGAAACATCATTTTCTCATGATAGCAGTATGGAACTGACAGAAAATACTAGTGATGATCCAATGCCAGAACTGCACAATCATACTACGCTCAAAGAAAGATGTCTTGAGTCTCTTGACTTTCTTGGAACCAAGACAGTCAAGAATATGCCTGCCTTTGGAGCTACTGAAGAAGACTTGAGTGGAAAGCAAAGTTTAGCTGGCAGTTATGATAATGAGGAGAAGATATCAAGTGACAGTGATAATATTTATCTTGGAGAGATCAAAGATACTACCTCAAGTTCCTTAAATGAGCCAGTTGAAATTATAAGAAGCAGTCATGAGGAGGCTCCAACCAATGAAACAGTCAATGATGTTCCAGAAGATTTGCTATCTAGTGTGAATACAGAAAATCCAGATATCAAATCTAAGTCACCTGGAAGAGATGTTGAAACCAAGAATCTGAATGGTGATAATGGTGAAAAAATTTCCATGTCCAAAAGTTTAGTCCTAGAAGGTTTAGTTAGATCACTCAGATCTAATTTGATTGGTTCAGGAGCACCTGTAAACGAACCAACTGCCAACGACAGAAAAGAAGGAATTGAAAATGTTAAACAGGAAACTGAGACTCTTGAAGAGTTCCCTACAAAGGAACAATATGAAACTCATATTAGTGCTGTTGTAGAACCTGAGACCCCTGTAGAGAAACAGAATAACACAGGATTGTGGTACTTGGTGTATAAGCACATGGTATCAAATATGGATGAAAACAATTCCGAGTCACTAATTGATGGGGCAGATGAAAAAGAGTCAGGGTTTGATGGGAGCAAAACAAGAGGAGCTTCCTTCTCTCATGAAAGTACACCCGTGACTGATCAAGAGATGAAATTTAAGGACCATGTCGTAGCTGATCCAGAAGTTGCACGCCAACAGAATGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATTCTTCCAGATGATCAGGATGACTTATCAGACAAGGAATCACTCATTGACAGCACAATTTCAGACAACTCCAAACAATCCAACAGAACTGAAAGAGTATACAGTGAAGGCCCGAACCAAAAAGAAGAAAAGATGGAATCCGGGAACGGAATGATCCAAAAACAAGAAGAATCAGCACCAAAGGAGCAAAACAAAACAAACCAGAAAATGTCTACAAGCTGGAGCAATCTTAAAAAAGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGGAAATTCAACCCAAGAGGGCCTAGATATCTACCTCTAGAGCCTGATTCAGAAGCTGAAAAAGTTAACTTAAGGCATCAAGACATGGAAGAACGAAAAGGTACGGAAGAATGGATGCTTGATTATGCACTTCGAAATTTGACACAGTGA

Predicted protein sequences of Glyma18g32620

Limit To All Plant Sequences

>Glyma18g32620.2   sequence type=predicted peptide   gene model=Glyma18g32620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWLHPWWCTINATSHLKENKDAIELVQKAFDEILLPEPEDLFSDDQFKSEGIDSGEVHLEKSEVERKRNTSTSTESPTAQRMGTKPDQRAPRSWSNLKKLILLKRFVNALEKVRNINPKRPRRFPSDANLEIEKVFLKHQTAGEKNNAEEWMLDYALQKVVSKLAPAQRQKVTLLVKAFETILPFQVAENSPRFSPTMEPQANPVQPLDNSSNHSEEETSFSHDSSMELTENTSDDPMPELHNHTTLKERCLESLDFLGTKTVKNMPAFGATEEDLSGKQSLAGSYDNEEKISSDSDNIYLGEIKDTTSSSLNEPVEIIRSSHEEAPTNETVNDVPEDLLSSVNTENPDIKSKSPGRDVETKNLNGDNGEKISMSKSLVLEGLVRSLRSNLIGSGAPVNEPTANDRKEGIENVKQETETLEEFPTKEQYETHISAVVEPETPVEKQNNTGLWYLVYKHMVSNMDENNSESLIDGADEKESGFDGSKTRGASFSHESTPVTDQEMKFKDHVVADPEVARQQNEAIKMVEEAIDSILPDDQDDLSDKESLIDSTISDNSKQSNRTERVYSEGPNQKEEKMESGNGMIQKQEESAPKEQNKTNQKMSTSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPLEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRNLTQ*

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