SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G66840 | AT | Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) | chr1:24933998-24936116 REVERSE LENGTH=607 | SoyBase | E_val: 3.00E-39 | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009903 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement | SoyBase | N/A | ISS |
| GO:0009904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF05701 | PFAM | Plant protein of unknown function (DUF827) | JGI | ISS | |
| UniRef100_B9SQ09 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9SQ09_RICCO | SoyBase | E_val: 2.00E-78 | ISS |
| UniRef100_UPI000233F246 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F246 related cluster n=1 Tax=unknown RepID=UPI000233F246 | SoyBase | E_val: 0 | ISS |
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Glyma18g32310 not represented in the dataset |
Glyma18g32310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g32310.1 sequence type=CDS gene model=Glyma18g32310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGGCTCAGCCTCAAAGCCTTGTAGCACAACAAGAGGAATTGGTTTGGTTAAAGCCGCTGTTAACTTATATCGTAACAGGAATATTGCAGATGTTAATAGTCCTTCGCTGAAAAAGAATTTCTCAACGAAGCACTCTTCAAAAGCAAAACAACTCCACAAACGAAGCAATGATATTGTTCGGTACAAAGAGACCAAATGGGCAGTAGAATGTGCAAAAGCTCAAGCAGAAGCTGAGGTTTCCAATGCTAAACAGACAGTGAAATATCTTTTCTCTATGATTGGGGAATCTATGTACAAGGTAAAAGCCGAAATGCGAGACATGGCACCACTAAAGAAGTATGTGAAACCGAGCAACGATGATAATCAGTATTCACAAGTTATGACAGAATTGGAACATGCTAAGTGGGAATTGTTCCAACTTAAGCTTCATGTGGGTTCTGTTTTGCAGGAGAAACTGCGAGTGGAGAACAAAATCAAAGCATCGAGATCCAGCATGAAGGAGATTGAGGAAGCCAGTGAAGAACAATTGGTGGTTCAATTGGCCAGAATGGATGCTTTCAATGAACTTAGAGACATTGAACAAGTTGAAAACACAAGGAACAAATTGAAAGAGGCCATTCAAGCGATAGATGATACAAAAGAGCTCGAAATGAAATTGGCCACGACATTGTCTGATATTGATATGTTGAAGAATGAGTTCAAGTTTGTTAACAAAACGGGGAAAAGGTTACTTAAAAGAGAGCCTACAAAAGAAGAAATAGAGGCAGCAAAGAAAGACTTGGCTTCCATTACAGAACAAGGTTTTAAGTTTATGGCCTCTATGGATGTCACAAGAAATCAACTGAAGTATGTGAGTGCAACCACGATTCATTTAAAGAACACGAAATCGAAAATTGCAAAATCTAAATTTGAAGTCGTGTCTGCTGTAGAGGAAAAGGCCAAATCAATAGTGAGTAACTTGACACAAACTCTTGATAAGCTCAAGTCCGAAATAGAAGTAGCAAAAAAAGAAAAAGATCTTATAATAAATGGAGAGGTTGCAGAAACCAAAGAAGAGATTAAAAAGGCCTTGTTGGAGATAAAGGTGACTGAGAAAAGATTTCAAGCTTTAGCCTTGGAGAAGCTCAAGATTCTTAGGGAGAATGCCATGAAAGACAAAATTAGTAATGTAACAAAGCCTAGTTCGTTAATTATCATATCTAAGTTTGAATATGAATATTTGAGAAACCATGCACGGAAGGCAAATGAAATTGCTGAGAAG
>Glyma18g32310.1 sequence type=predicted peptide gene model=Glyma18g32310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGSASKPCSTTRGIGLVKAAVNLYRNRNIADVNSPSLKKNFSTKHSSKAKQLHKRSNDIVRYKETKWAVECAKAQAEAEVSNAKQTVKYLFSMIGESMYKVKAEMRDMAPLKKYVKPSNDDNQYSQVMTELEHAKWELFQLKLHVGSVLQEKLRVENKIKASRSSMKEIEEASEEQLVVQLARMDAFNELRDIEQVENTRNKLKEAIQAIDDTKELEMKLATTLSDIDMLKNEFKFVNKTGKRLLKREPTKEEIEAAKKDLASITEQGFKFMASMDVTRNQLKYVSATTIHLKNTKSKIAKSKFEVVSAVEEKAKSIVSNLTQTLDKLKSEIEVAKKEKDLIINGEVAETKEEIKKALLEIKVTEKRFQALALEKLKILRENAMKDKISNVTKPSSLIIISKFEYEYLRNHARKANEIAEK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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