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Report for Sequence Feature Glyma18g32221

Feature Type:gene_model
Chromosome:Gm18
Start:37322266
stop:37323973
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g32221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG01100AT Annotation by Michelle Graham. TAIR10: NADH dehydrogenase family protein | chrC:119847-122009 REVERSE LENGTH=360 SoyBaseE_val: 7.00E-46ISS
GO:0006091GO-bp Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0045333GO-bp Annotation by Michelle Graham. GO Biological Process: cellular respiration SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016651GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H SoyBaseN/AISS
PTHR11432Panther NADH DEHYDROGENASE SUBUNIT 1 JGI ISS
PF00146PFAM NADH dehydrogenase JGI ISS
UniRef100_I1N1X6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1X6_SOYBN SoyBaseE_val: 8.00E-73ISS
UniRef100_Q2PMN7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic n=1 Tax=Glycine max RepID=NU1C_SOYBN SoyBaseE_val: 2.00E-52ISS

Expression Patterns of Glyma18g32221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g32221 not represented in the dataset
Glyma18g32221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g32221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g32221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g32221
>Glyma18g32221.1   sequence type=CDS   gene model=Glyma18g32221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTACATACCTGTTCATATTCACACTTAGCTTTTCACACCAGACACCTATTCACCAAAATAGCTTACCAAGTAACACAAGTTCCCCGAGAGTTTGATACTCGGTTCTTACCGTTTTATACTACTTGTGCGATCCGGTGCACTTGCCCAGAATGTGAAAGATTACCTTTTGATTTACCGAAAGCGGAAGAAGAACTAGTAGCGGGTTATCAAACCGAATACTCGGGTATCAAATTTGGTTTATTTTATGTTGCTTCCTATTTAAACCTATTCATTTCTTCCTTACTTGTAACAGTTCTTTACTTGGTGGTTCAAATATCTCTATTCCATACATATTCGTTTCTGACTTTTTTTGAAATAAATCAAACATATGGAGTTTTTGTAATGATAATTGATATCTTTATTACACTAGCTAAAACTTATTTATTCTTATTCCTTTCTATCGCAACAAGATGGACTTTGCCTAGGCTAAGAATAGATCAATTATGA
Predicted protein sequences of Glyma18g32221
>Glyma18g32221.1   sequence type=predicted peptide   gene model=Glyma18g32221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SLHTCSYSHLAFHTRHLFTKIAYQVTQVPREFDTRFLPFYTTCAIRCTCPECERLPFDLPKAEEELVAGYQTEYSGIKFGLFYVASYLNLFISSLLVTVLYLVVQISLFHTYSFLTFFEINQTYGVFVMIIDIFITLAKTYLFLFLSIATRWTLPRLRIDQL*






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