SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| ATCG01110 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393 | SoyBase | E_val: 3.00E-93 | ISS |
| GO:0009772 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0045333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular respiration | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003959 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADPH dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016651 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H | SoyBase | N/A | ISS |
| GO:0048038 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quinone binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG2870 | KOG | NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit | JGI | ISS | |
| PTHR11993 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR11993:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00146 | PFAM | NADH dehydrogenase | JGI | ISS | |
| PF00346 | PFAM | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | JGI | ISS | |
| UniRef100_G7KIC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: NAD(P)H-quinone oxidoreductase subunit H n=1 Tax=Medicago truncatula RepID=G7KIC4_MEDTR | SoyBase | E_val: 8.00E-109 | ISS |
| UniRef100_G7KIC4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-quinone oxidoreductase subunit H n=1 Tax=Medicago truncatula RepID=G7KIC4_MEDTR | SoyBase | E_val: 8.00E-109 | ISS |
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Glyma18g32211 not represented in the dataset |
Glyma18g32211 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g155700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g32211.1 sequence type=CDS gene model=Glyma18g32211 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATCTCAACTACAAGAAAGGACTTCATGATAGTCAATATGGGGCTTCACCACCCATCAATGCATGGTGTTCTTAGACTTATTGTTACTCTAGACGATGAGGATGTTATTGATTGTGAACCTATATTGGGTTATTTACACATAGGAATGGAAAAAATAGCGGAAAATCGAACAATTATACAATATATGTCTTATGTAACACGTTGGGACTATTTAGCTACTATGTTCACAGAAGCAATAATTGTAAATGGACCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGTTATATCCAAGTAATAATGTTGGAGTTAAGTCGTATAGCTTCTCACCTACTATGGTTAGGACCTTTTATGGCAGATATTGGTGCACAAACCCCCTTCTTCTATATTTTCAGAGAAAGACAATTAATATATGATTTATTTGAAGTTGCGACGGGTATGAGAATGATGCATAATTTTTTTCTGGATAATTATGAATGTTACGAAGAATTTGATTGGGAAGTTCAATGGCAAAAAGAACGAGATTTGTTAGCTCGTTATTTAGTTCGAAAGGAATCCATAAAAATTATTCAACAGGCTTTGGAAGGAATTCCCGACGGACCATATGAAAATTTAGAAATTCGCTGCTTTGATAGAGAAAAAGAGCCAGAATGGAATGAGTTTGAGTATCGATTTATTAAACTTTATGTAAGAATTGAAGCCCCCAAGGGAGAATTAGGAATTTTTCTAATAGGGGATCAAAATGGTTTTCCTTGGAGATGGAAAATTCATCCGCTAGGTTTTATCAATTTGCAAATTCTTCCTCAATTAGTTAAAAAAAATGAAATTGGCCGATATTATGACAATACTAGATTGGAATCTTTTAAAGAGATATATGGAATTATATGGGTATTTGCCCTTATTTTGATTCTTATATTGGGAATTACGATAAGTGTACTAGCAATTGTATGGTTAGAAAGGGAAATATCCGCAGGGATACAACAACGTATTGGACCTGAATACACAGGTCCTTTTGGAGTTCTTCAAGCTCTCCTAGACGAAACAAAATTACTTTTCAAAGAGAATCTTATTCCATCTAGAGGAGATATTTGTTTATTCAGTATAGGACTATCTATATCA
>Glyma18g32211.1 sequence type=predicted peptide gene model=Glyma18g32211 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNISTTRKDFMIVNMGLHHPSMHGVLRLIVTLDDEDVIDCEPILGYLHIGMEKIAENRTIIQYMSYVTRWDYLATMFTEAIIVNGPELLGNIQVPKRASYIQVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERQLIYDLFEVATGMRMMHNFFLDNYECYEEFDWEVQWQKERDLLARYLVRKESIKIIQQALEGIPDGPYENLEIRCFDREKEPEWNEFEYRFIKLYVRIEAPKGELGIFLIGDQNGFPWRWKIHPLGFINLQILPQLVKKNEIGRYYDNTRLESFKEIYGIIWVFALILILILGITISVLAIVWLEREISAGIQQRIGPEYTGPFGVLQALLDETKLLFKENLIPSRGDICLFSIGLSIS
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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