SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G05990 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390 | SoyBase | E_val: 0 | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005835 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: fatty acid synthase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004318 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enoyl-[acyl-carrier-protein] reductase (NADH) activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016631 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enoyl-[acyl-carrier-protein] reductase activity | SoyBase | N/A | ISS |
| KOG0725 | KOG | Reductases with broad range of substrate specificities | JGI | ISS | |
| UniRef100_E6Y9A9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Enoyl-ACP reductase n=1 Tax=Arachis hypogaea RepID=E6Y9A9_ARAHY | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N1X0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1X0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g31780 not represented in the dataset |
Glyma18g31780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g156100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g31780.1 sequence type=CDS gene model=Glyma18g31780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACAACAACAGTTTCCAACTTGCCAATTGCTATGTCAAGACCCAAGATTCCTTCATCACAAAGGATTGCAAATGTATGTCCTGCAATTCTTGGAGGTAGATCTAAGGTTGGTTCATGTTATAAACTGGCAAGTGTTTGTCATGTTGCATCAGCACAACCTTTCCATCAGGGCTTGGCAATGACATCAGGTGCTGCAAAATATGGCAAAATCCTAACAAAGGCAATGTCCGAGTCTAGTTCAAACAAGGAAGTTGCAGGATTGCCAATTGATTTGAAAGGTAAAAGGGCTTTCATTGCTGGTGTGGCTGATGACAATGGATATGGCTGGGCAATAGCAAAATCTCTCGCAGCAGCAGGAGCTGAAATTCTTGTCGGCACATGGGTACCTGCTTTAAATATATTTGAGTCCAGTTTACGACGTGGAAAATTTGACGAGTCACGCAAATTACAAGATGGTTCGTTAATGGAGATTGCTAAAGTGTATCCTTTGGATGCAGTATATGACAATCCTGAAGATGTCCCGGAAGATGTGAAAGCTAACAAACGCTATGCTGGAGCCACAAATTGGACTGTACAGGAAGTTGCTGAATCTGTCAAGAAAGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGGTCAGCAAACCATTGTCTGAGACATCTCGGAAAGGATATCTTGCTGCCCTGTCTGCATCAAGTTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATAAACCCAGATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAGAGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCAGGTCCATTGGGAAGCCGTGCAGCGAAAGCGATTGGTTTCATTGACATGATGATTGACTATTCATTTACCAATGCACCACTGCAGAAAGAACTACATGCTGAGGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTATTACAGGCGCTGTCATATATGTTGACAATGGTCTAAACGCTATGGGTGTTGGAGTTGACAGTCCAATATTTAAAGAACTTGACATTCCAAAAGAGCATCATTGA
>Glyma18g31780.1 sequence type=predicted peptide gene model=Glyma18g31780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTTVSNLPIAMSRPKIPSSQRIANVCPAILGGRSKVGSCYKLASVCHVASAQPFHQGLAMTSGAAKYGKILTKAMSESSSNKEVAGLPIDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFESSLRRGKFDESRKLQDGSLMEIAKVYPLDAVYDNPEDVPEDVKANKRYAGATNWTVQEVAESVKKDFGTIDILVHSLANGPEVSKPLSETSRKGYLAALSASSYSYISLLKHFLPIINPDGSAISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKKRIRVNTISAGPLGSRAAKAIGFIDMMIDYSFTNAPLQKELHAEEVGNTAAFLSSPLASAITGAVIYVDNGLNAMGVGVDSPIFKELDIPKEHH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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