Glyma18g30900 - SoyBase

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Report for Sequence Feature Glyma18g30900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	35685409
stop:	35688223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g30900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25290	AT	Annotation by Michelle Graham. TAIR10: Auxin-responsive family protein \| chr3:9208955-9210353 FORWARD LENGTH=393	SoyBase	E_val: 1.00E-144	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG4293	KOG	Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains	JGI		ISS
PTHR23130	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR23130:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04526	PFAM	Protein of unknown function (DUF568)	JGI		ISS
UniRef100_G7KY03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced in root cultures protein n=1 Tax=Medicago truncatula RepID=G7KY03_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC9B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC9B related cluster n=1 Tax=unknown RepID=UPI000233EC9B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g30900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g30900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g155100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g30900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g30900

Limit To All Plant Sequences

>Glyma18g30900.2   sequence type=transcript   gene model=Glyma18g30900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAAATTCATATCTGATATCCCACATCGCGCTGTCCCCTTATCTCTATTAATAACATCGATTTACACAACAACAGTTTCAGCATTCCGTGTACTTCGCTTCCCCTTAATTCCCAACCTTACATTATTAACTTCACCAACTCATCTCCCTCTACCAAACAAAACGACACAACAAAACCCTCTCTCTAAAACCCTCTCTCTGTCTCCCTTCCTTCTCATCTTCACCACCACCAATGGCGTCGCCGCCGCCACCACCTTCTCTCCTCCTCCTCTTCCTCACCCTCGTCGCCGCCACGGCTTCCTCCCTCACCTGCACCACCCAAAAGCTCACGGACTCCAAGAACAACCTCTACTCCAACTGCCTGGACCTGCCCGCGCTCGATTCCTTCCTCCACTGGACTCACGACCCCACCAACGCCTCCCTCTCGGTGGCCTTCGCGGCGGCGCCGCCCAACTCCGGCGGCTGGGTGTCCTGGGGGATCAACCCCACCGCTATCGGCATGCAGGGGGCGCAGGTGCTGGCCGCGTACAAAGCCGACAACGGCGCCGTCACCGTGAAAACCCTCGACCTTAAATCCTACACCGCCATTGTTCCGGGGAAGCTGTCGTTCGACGTGTGGGACGTGAGGGGGGAGGAGGTTAGGGGTGTGATTAGGATTTTCGCGACGGTTAAGGTTCCGGAGAAGGTGGAGAGTGTGAACCACGTGTGGCAGGTGGGGCCCTCTGTCACGGCGGGGAGGATTGACAGGCATGACTTTGGTCCCTCCAATATGAATTCGAAGGGCGTTCTTAGCTTCAACGGGGCGCAAGTTGGTGGTGGTGCCGTCGACCCCATTACCATTAAGAAAAATATTCATGGAATTCTAAATGCTGTGAGTTGGGGCGTTCTGTTTCCCCTTGGAGTGATCGTAGCAAGGTATATGAGAACTTTCCCATCTGCAGATCCAGCTTGGTTCTATCTTCATGTTGGTTGCCAGGTATCTGCTTACGCCATTGGGGTTGCTGGCTGGGGAACTGGCATGAAACTTGGAAGCGAATCAGTGGGGATTCAATATAGAAGTCATCGCTATATTGGAATTGCCCTCTTTTGTTTTGCAACACTACAGGTAAAAAAACATCCAATATTCTTCGATTACAATCCAACATACACCGAGAAAATAGTTTATGCACTCCCAGGACAGAAAGGTTTACACTGATGTCTAATCACAAATTATTGTGTATAGTAAATTTGTTGAGCATGGAGCTTGAAGGAAACTAAATTGTCATGTAATAACCTAAGTAGTGTTGAAGGAAACTAAATTGTCATGTAATAACCTAAGTAGTGTTGAGGAAACTAAATCTACAGATGAAGTTTGGCAATAATGTTAGCTGTTGTATCCCTCCATGTTTTGATTTTGTAGATTTTTGCATTGTTCCTGAGGCCAGTGAAGGATCACAAGTATAGGTACATCTGGAACATATATCACCACAGCGTCGGATACAGCATAGTTATCCTGGGAATCATCAACATCTTCAGGGGCTTTAGCATCTTGCATCCTGATCAGAAATGGAAATCAACTTACACTGCAGTTCTTATTGCACTTGGTGCAGTTGCCTTGTTCTTGGAAGTGATCACATGGATTGTTGTGTTGAAGAGAAAGTCTTACAAGTCCACCAAAACCTATGATGGATACAACAATGGACAATCTAGGGAAGAGCCCCTTAACATATAAAAATAGAGTGAACAAATTTGGCTTGGATGTGTTTTACTTCTTCCCCTCCCTCTTTCCCGTCCCCTTCTTTTACCTTTTTTTCTTCTATTTATGACATATCTTTGTATAATGCTTGCGTATATAATATAGATTTTTCATTCTGTCTTTAAATAGGTTGAAGAAAACTTTTACCATTGAAAACTTATTCACAAGAGGATTGAATTATGTTCTCTCCGTGCGGGTGTTTCTTTAATCCTTTATTAGGTTTCAATTAATTATTGC

Coding sequences of Glyma18g30900

Limit To All Plant Sequences

>Glyma18g30900.1   sequence type=CDS   gene model=Glyma18g30900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGCCGCCGCCACCACCTTCTCTCCTCCTCCTCTTCCTCACCCTCGTCGCCGCCACGGCTTCCTCCCTCACCTGCACCACCCAAAAGCTCACGGACTCCAAGAACAACCTCTACTCCAACTGCCTGGACCTGCCCGCGCTCGATTCCTTCCTCCACTGGACTCACGACCCCACCAACGCCTCCCTCTCGGTGGCCTTCGCGGCGGCGCCGCCCAACTCCGGCGGCTGGGTGTCCTGGGGGATCAACCCCACCGCTATCGGCATGCAGGGGGCGCAGGTGCTGGCCGCGTACAAAGCCGACAACGGCGCCGTCACCGTGAAAACCCTCGACCTTAAATCCTACACCGCCATTGTTCCGGGGAAGCTGTCGTTCGACGTGTGGGACGTGAGGGGGGAGGAGGTTAGGGGTGTGATTAGGATTTTCGCGACGGTTAAGGTTCCGGAGAAGGTGGAGAGTGTGAACCACGTGTGGCAGGTGGGGCCCTCTGTCACGGCGGGGAGGATTGACAGGCATGACTTTGGTCCCTCCAATATGAATTCGAAGGGCGTTCTTAGCTTCAACGGGGCGCAAGTTGGTGGTGGTGCCGTCGACCCCATTACCATTAAGAAAAATATTCATGGAATTCTAAATGCTGTGAGTTGGGGCGTTCTGTTTCCCCTTGGAGTGATCGTAGCAAGGTATATGAGAACTTTCCCATCTGCAGATCCAGCTTGGTTCTATCTTCATGTTGGTTGCCAGGTATCTGCTTACGCCATTGGGGTTGCTGGCTGGGGAACTGGCATGAAACTTGGAAGCGAATCAGTGGGGATTCAATATAGAAGTCATCGCTATATTGGAATTGCCCTCTTTTGTTTTGCAACACTACAGATTTTTGCATTGTTCCTGAGGCCAGTGAAGGATCACAAGTATAGGTACATCTGGAACATATATCACCACAGCGTCGGATACAGCATAGTTATCCTGGGAATCATCAACATCTTCAGGGGCTTTAGCATCTTGCATCCTGATCAGAAATGGAAATCAACTTACACTGCAGTTCTTATTGCACTTGGTGCAGTTGCCTTGTTCTTGGAAGTGATCACATGGATTGTTGTGTTGAAGAGAAAGTCTTACAAGTCCACCAAAACCTATGATGGATACAACAATGGACAATCTAGGGAAGAGCCCCTTAACATATAA

>Glyma18g30900.2   sequence type=CDS   gene model=Glyma18g30900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGCCGCCGCCACCACCTTCTCTCCTCCTCCTCTTCCTCACCCTCGTCGCCGCCACGGCTTCCTCCCTCACCTGCACCACCCAAAAGCTCACGGACTCCAAGAACAACCTCTACTCCAACTGCCTGGACCTGCCCGCGCTCGATTCCTTCCTCCACTGGACTCACGACCCCACCAACGCCTCCCTCTCGGTGGCCTTCGCGGCGGCGCCGCCCAACTCCGGCGGCTGGGTGTCCTGGGGGATCAACCCCACCGCTATCGGCATGCAGGGGGCGCAGGTGCTGGCCGCGTACAAAGCCGACAACGGCGCCGTCACCGTGAAAACCCTCGACCTTAAATCCTACACCGCCATTGTTCCGGGGAAGCTGTCGTTCGACGTGTGGGACGTGAGGGGGGAGGAGGTTAGGGGTGTGATTAGGATTTTCGCGACGGTTAAGGTTCCGGAGAAGGTGGAGAGTGTGAACCACGTGTGGCAGGTGGGGCCCTCTGTCACGGCGGGGAGGATTGACAGGCATGACTTTGGTCCCTCCAATATGAATTCGAAGGGCGTTCTTAGCTTCAACGGGGCGCAAGTTGGTGGTGGTGCCGTCGACCCCATTACCATTAAGAAAAATATTCATGGAATTCTAAATGCTGTGAGTTGGGGCGTTCTGTTTCCCCTTGGAGTGATCGTAGCAAGGTATATGAGAACTTTCCCATCTGCAGATCCAGCTTGGTTCTATCTTCATGTTGGTTGCCAGGTATCTGCTTACGCCATTGGGGTTGCTGGCTGGGGAACTGGCATGAAACTTGGAAGCGAATCAGTGGGGATTCAATATAGAAGTCATCGCTATATTGGAATTGCCCTCTTTTGTTTTGCAACACTACAGGTAAAAAAACATCCAATATTCTTCGATTACAATCCAACATACACCGAGAAAATAGTTTATGCACTCCCAGGACAGAAAGGTTTACACTGA

Predicted protein sequences of Glyma18g30900

Limit To All Plant Sequences

>Glyma18g30900.1   sequence type=predicted peptide   gene model=Glyma18g30900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPPPPPSLLLLFLTLVAATASSLTCTTQKLTDSKNNLYSNCLDLPALDSFLHWTHDPTNASLSVAFAAAPPNSGGWVSWGINPTAIGMQGAQVLAAYKADNGAVTVKTLDLKSYTAIVPGKLSFDVWDVRGEEVRGVIRIFATVKVPEKVESVNHVWQVGPSVTAGRIDRHDFGPSNMNSKGVLSFNGAQVGGGAVDPITIKKNIHGILNAVSWGVLFPLGVIVARYMRTFPSADPAWFYLHVGCQVSAYAIGVAGWGTGMKLGSESVGIQYRSHRYIGIALFCFATLQIFALFLRPVKDHKYRYIWNIYHHSVGYSIVILGIINIFRGFSILHPDQKWKSTYTAVLIALGAVALFLEVITWIVVLKRKSYKSTKTYDGYNNGQSREEPLNI*

>Glyma18g30900.2   sequence type=predicted peptide   gene model=Glyma18g30900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPPPPPSLLLLFLTLVAATASSLTCTTQKLTDSKNNLYSNCLDLPALDSFLHWTHDPTNASLSVAFAAAPPNSGGWVSWGINPTAIGMQGAQVLAAYKADNGAVTVKTLDLKSYTAIVPGKLSFDVWDVRGEEVRGVIRIFATVKVPEKVESVNHVWQVGPSVTAGRIDRHDFGPSNMNSKGVLSFNGAQVGGGAVDPITIKKNIHGILNAVSWGVLFPLGVIVARYMRTFPSADPAWFYLHVGCQVSAYAIGVAGWGTGMKLGSESVGIQYRSHRYIGIALFCFATLQVKKHPIFFDYNPTYTEKIVYALPGQKGLH*

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