Glyma18g30790 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g30790

Feature Type:	gene_model
Chromosome:	Gm18
Start:	35300678
stop:	35303292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g30790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18990	AT	Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein \| chr3:6549077-6551568 REVERSE LENGTH=341	SoyBase	E_val: 3.00E-33	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
UniRef100_G7KVV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: B3 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KVV7_MEDTR	SoyBase	E_val: 5.00E-109	ISS
UniRef100_I1N1W3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1W3_SOYBN	SoyBase	E_val: 1.00E-168	ISS

Expression Patterns of Glyma18g30790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g30790 not represented in the dataset	Glyma18g30790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g30790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g155000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g30790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g30790

Limit To All Plant Sequences

>Glyma18g30790.1   sequence type=CDS   gene model=Glyma18g30790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTACATTTCCTCAACAACTTCTGGTGAAGCCAATCCACTTTTTCAAGATCATAACCGCTCACAATGTTCATGAAGGAAAGCTAATGATCCCAAATAAGTTTGTGAAGAAATATGGAAAACGCTTACAAAATACTCTATTTCTGAAGACTCCAAATGGTGCTGAATGGAAAATGATTTTGAAAAAACGTGACGGTAAAATATGGTTTCAAAAGGGATGGAAAGAGTTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGATGGGATGTAACTTCTCATTTTCAGGTACACATCTTTGATTTGAGTGCCTTAGAGATTGAGTACCCTACCGAAATAATAAAAGGTAAAACAGCCTCCAATAGAAAAGGAAATGAATCTCCAGGTGATGAACATTTGGAGTGTCACAGATCAGGTCAAAAGAGAAAAGTTAACTCAGTTGAATTTCTTCAACAATGTCAAATGAGAAGTCGCAAGTGTGTTAAAGTTGAGAACACGATGATACTGCCAAGGCAGGCTCTGCATCACACTGCCACAAAATGCAAAGGAAAATCGAAGGCTATGGATAACCAAGTTACAGCTCTTGATAGAGCAAGTTCTTTCAAATCTTGTAATCCATTCTTCTTGACCGTCATGCATCGAACCCACATCAGTTCTCACGGTAGTCTGAACTTACCAATGAAGTTCTGTAGGAGTCACCTTGATTTGCACAAGAAGCGGAGACTTATCAGCCTTCAGGTGTTAAGTGGGAGAATTTGGCCTGCAAAGTATCAGATCCATAAACAAAAGACTGCTATAAGATTTAAACTCTCATGGAACGCATTTGTCAAGGACAATAACTTGAAAGTTGGTGATGTTTGCATCTTTGAACTCGTTCATGGAACTAAACTAACCTTCCTGGTTCACATCTTCAGAGAGACAGATAGTTCAAATTGTTCAACGTCTCAAGAATCTGGTCAAATGAGAGCAGCTTGTCAAAGTCAGAGAAAAGAATTGAAAACCATCACTGCTACCAAATAA

Predicted protein sequences of Glyma18g30790

Limit To All Plant Sequences

>Glyma18g30790.1   sequence type=predicted peptide   gene model=Glyma18g30790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATFPQQLLVKPIHFFKIITAHNVHEGKLMIPNKFVKKYGKRLQNTLFLKTPNGAEWKMILKKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRWDVTSHFQVHIFDLSALEIEYPTEIIKGKTASNRKGNESPGDEHLECHRSGQKRKVNSVEFLQQCQMRSRKCVKVENTMILPRQALHHTATKCKGKSKAMDNQVTALDRASSFKSCNPFFLTVMHRTHISSHGSLNLPMKFCRSHLDLHKKRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTKLTFLVHIFRETDSSNCSTSQESGQMRAACQSQRKELKTITATK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain