SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g30180): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g30180): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g30180

Feature Type:gene_model
Chromosome:Gm18
Start:34993021
stop:34994149
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g30180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39130AT Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr2:16323171-16326744 REVERSE LENGTH=550 SoyBaseE_val: 5.00E-39ISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0015171GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity SoyBaseN/AISS
PTHR22950Panther AMINO ACID TRANSPORTER JGI ISS
PTHR22950:SF9Panther SUBFAMILY NOT NAMED JGI ISS
PF01490PFAM Transmembrane amino acid transporter protein JGI ISS
UniRef100_G7I4Z9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Medicago truncatula RepID=G7I4Z9_MEDTR SoyBaseE_val: 6.00E-53ISS
UniRef100_I1NHH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHH8_SOYBN SoyBaseE_val: 8.00E-60ISS

Expression Patterns of Glyma18g30180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g30180 not represented in the dataset
Glyma18g30180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g30180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g154800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g30180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g30180
>Glyma18g30180.1   sequence type=CDS   gene model=Glyma18g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTGGAGGAGTTGATACCATCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAAGAGGGTTGGTACTTTCTACCCTGGTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGAGGCAAAGTGACACGAACACAGGCAGCACTTTGCATTACAATTATCATAGTAGGTGTTGTATGTTCTACTTTTGGATCATACTCCGCCCTTGCCGAGATTGTGAAGAGTTTGAGGGGATGA
Predicted protein sequences of Glyma18g30180
>Glyma18g30180.1   sequence type=predicted peptide   gene model=Glyma18g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLEELIPSNHAKSYLYSIFIRRGLVLSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCACFLRILRGKVTRTQAALCITIIIVGVVCSTFGSYSALAEIVKSLRG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo