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Report for Sequence Feature Glyma18g30080

Feature Type:gene_model
Chromosome:Gm18
Start:34616520
stop:34621170
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g30080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48800AT Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein | chr5:19786881-19789003 FORWARD LENGTH=614 SoyBaseE_val: 0ISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
PTHR13690Panther KELCH-RELATED JGI ISS
PTHR13690:SF174Panther KELCH-RELATED JGI ISS
PF00651PFAM BTB/POZ domain JGI ISS
PF03000PFAM NPH3 family JGI ISS
UniRef100_G7JUJ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JUJ0_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F0E7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F0E7 related cluster n=1 Tax=unknown RepID=UPI000233F0E7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g30080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g30080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g154700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g30080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g30080
>Glyma18g30080.2   sequence type=CDS   gene model=Glyma18g30080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACCACCTGTTCAACGAAAATGGCCAAAGAACTCCCCCAACAGCAACATCTCCAACTGGGTCTGTCTCTTTCCCTTCACTATTACCTTAAACCCACTACTACTTTACTTTTATCTTTCCTTTCACATTCTGTTCTGTTTTACTATATTACTTGTTTTTTCTCACTCCCTATGGACCGTACTACTGACAAGCAACAGCACCAGCAGCAGCAGTTATCCTTGGCCAAGGGTACAAGGCAAAGAAACAATGAATGGATTTTTCGTGATGTACCAAGTGATGTAACTATAGAAGTAAATCGAGGAACATTTTCATTGCACAAGTTTCCTCTTGTCTCCAGAAGTGGAAGAATAAGGAGGTTAGTTGCAGAACACAGGGATTCTGATATCTCAAGAGTTGAGCTTCTAAATCTACCAGGAGGTGCTGAATGCTTTGAGTTGGCAGCCAAATTTTGTTATGGCATTAACTTTGAGATCAGATCCACAAATGTTGCTCAGCTATGTTGTGTCTCTGATTACCTTGAAATGACTGAAGACTTTTCAAAAGACAACCTTGGCTCGCGTGCCGAGGAATATCTTGATAGTATAGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCTTGCAACAATGTGAGAGCCTGCTTCCTCTTGCTGATGAGCTAAAAGTAGTTAGCCGCTGCATTGATGCAATAGCTTCAAAAGCATGTGCAGAGCAAATAGCTTCTAGTTTTTCAAGATTAGAGTATAGCAGCTCAGGAAGGTTACACATGAGTAGGCAAGCCAAATGTGATGGTGACTGGTGGATAGAAGATCTTTCTGTTCTAAGAATTGATATGTATCAAAGAATCATAACAGCCATGAAATGTCGTGGGGTTCGACCGGAGAGCATTGGTGCTTCCCTTGTGAACTATGCACAAAAAGAATTGACAAAGAAATCCAGCTTGTGGAATCCATCTAGCCAGACTAAGGTTGATTCAAATTCCACTTTGCATGAAAAACTTGTGGTTGAGACCGTTGTTAGCCTTTTGCCTGTTGAGAAACTAGCTGTTCCAATCAATTTCCTTTTTGGACTTCTGCGAAGTGCAGTGATGCTTGATTGTACAATCGCTTCTAGGCTAGACTTGGAAAGAAGAATTGGATCCCAGCTAGATGTTGCCACTCTTGATGACATTTTGATACCATCTTTCAGGCATGCAGGTGATACCTTATTTGATGTTGAGACAGTTCATAGAATTTTGGTAAACTTCTGTCAGCAGGATGATAGTGAAGAAGAACCAGAAGATACTTCTGTTTTTGAATCTGACAGCCCTCCTTCACCATCTCAAACTGCACTAATTAAAGTGTCAAAACTAGTGGATAACTACCTTGCTGAAATTGCCCCTGATGCAAACCTAAAACTTTCCAAGTTTATGGTCATCGCTGAAACCTTACCTGCACATGCACGCACAGTTCATGATGGGTTATATCGAGCAATTGATATTTACTTAAAAGCTCATCAAGGTTCGACAGATTTGGACAAGAAGAAACTATGCAAATTGATTGATTTTCAAAAGCTTTCTCAAGAAGCTGGAGCACATGCTGCACAAAATGAGCGCCTTCCTCTCCAATCAATAGTGCAAGTTCTATACTTTGAACAACTAAGACTTAGAAATTCATTGTCCTGCTCCTACGCAGAAGATGATACCAAGCCAATACACCAGTCATGGCGCATAAGTAGTGGAGCACTAAGTGCAGCAATGTCTCCACGAGACAACTATGCATCACTGAGACGCGAAAACTGCGAGCTTAAACTTGAATTGGCTCGGCTAAGAATGAGACTAAATGATCTAGAGAGGGAGCATGTTTGCATGAAAAGGGATATGACTAAGTCCGGATCGCGTAAATTTATGAGTTCTTTCTCCAAAAAAATTGGTAAACTTAGTCTTTTTGGACATAGTTCTTCAAGAGGATCAAGTTCTCCATCCAGGAACTCTCAAAGAACAGATTCAAAGGTGATTGAGAGAACCTGTGCTAGCACAGAGTAG
Predicted protein sequences of Glyma18g30080
>Glyma18g30080.2   sequence type=predicted peptide   gene model=Glyma18g30080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTCSTKMAKELPQQQHLQLGLSLSLHYYLKPTTTLLLSFLSHSVLFYYITCFFSLPMDRTTDKQQHQQQQLSLAKGTRQRNNEWIFRDVPSDVTIEVNRGTFSLHKFPLVSRSGRIRRLVAEHRDSDISRVELLNLPGGAECFELAAKFCYGINFEIRSTNVAQLCCVSDYLEMTEDFSKDNLGSRAEEYLDSIVCKNLEMCVEVLQQCESLLPLADELKVVSRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQAKCDGDWWIEDLSVLRIDMYQRIITAMKCRGVRPESIGASLVNYAQKELTKKSSLWNPSSQTKVDSNSTLHEKLVVETVVSLLPVEKLAVPINFLFGLLRSAVMLDCTIASRLDLERRIGSQLDVATLDDILIPSFRHAGDTLFDVETVHRILVNFCQQDDSEEEPEDTSVFESDSPPSPSQTALIKVSKLVDNYLAEIAPDANLKLSKFMVIAETLPAHARTVHDGLYRAIDIYLKAHQGSTDLDKKKLCKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSCSYAEDDTKPIHQSWRISSGALSAAMSPRDNYASLRRENCELKLELARLRMRLNDLEREHVCMKRDMTKSGSRKFMSSFSKKIGKLSLFGHSSSRGSSSPSRNSQRTDSKVIERTCASTE*






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