Report for Sequence Feature Glyma18g29640
Feature Type: gene_model
Chromosome: Gm18
Start: 34269167
stop: 34271885
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g29640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38090 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein S5 domain 2-like superfamily protein | chr4:17883757-17884702 REVERSE LENGTH=234
SoyBase E_val: 4.00E-113 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3299
KOG
Uncharacterized conserved protein
JGI ISS
PTHR16301 Panther
IMPACT-RELATED
JGI ISS
PF01205 PFAM
Uncharacterized protein family UPF0029
JGI ISS
UniRef100_B9DG41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT4G38090 protein n=2 Tax=Arabidopsis thaliana RepID=B9DG41_ARATH
SoyBase E_val: 2.00E-110 ISS
UniRef100_I1N1W0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1W0_SOYBN
SoyBase E_val: 2.00E-174 ISS
Expression Patterns of Glyma18g29640
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g29640
Paralog Evidence Comments
Glyma08g38330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g29640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g146100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g29640
Coding sequences of Glyma18g29640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g29640.1 sequence type=CDS gene model=Glyma18g29640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTGTGGCGGTAACAATACCCAGTTATCAGCACCGCATCTACGCTTCACTCATCTACATCGCCAAGGCTAAGAAAACCACCATGGCCAGCACCAGCAGCAGCAATCCTGGTGGGGCCTTCACCACCCTCCAAGAGAGGGTCACTTTCGAGAAGGAGATAAAAAAGAGCAAGTTCATCGCCATTGCTGGCCCCATCCCCGATGAAAAATCCGCCATGTCTTTCCTTTCCCAGGTACGGGATCCACGTGCCACCCACAATTGCTGGGCTTATAAGGTGGGGGATCAATATCGGTCCAATGATGATGGTGAGCCTTCAGGAACAGCTGGGAAACCAATACAAACTGCTATTGATTCTTCAGGAATAGATAGAGTAATGGTGGTTGTGATCAGGTATTTTGGGGGTATCAAATTAGGCACTGGAGGATTGGTCAGGGCTTATGGAGGAGTTGCATCAGAATGCTTGAGAAATGCCCCAACTTGCCTTGTAAAAACTAAGGTGCCAATGGGTGTAGAGGTTCCCTTTGAGCTAGTTGGAGTTCTCAACCATCAGCTGCAGTCTTTTCACGTGGAAGACATCAAGCAGGATTATGATACTGGTAAAGATGGCATATCTATGGTTACTTTTAAAGTTGATTTTGATCAAGCTGAGAAATTGGAGGATGCAATCAAAGCCAATTGTAGCAGAGAATTGCAGTTTTATAGGCGTTGA
Predicted protein sequences of Glyma18g29640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g29640.1 sequence type=predicted peptide gene model=Glyma18g29640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPVAVTIPSYQHRIYASLIYIAKAKKTTMASTSSSNPGGAFTTLQERVTFEKEIKKSKFIAIAGPIPDEKSAMSFLSQVRDPRATHNCWAYKVGDQYRSNDDGEPSGTAGKPIQTAIDSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLRNAPTCLVKTKVPMGVEVPFELVGVLNHQLQSFHVEDIKQDYDTGKDGISMVTFKVDFDQAEKLEDAIKANCSRELQFYRR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
