Report for Sequence Feature Glyma18g29560
Feature Type: gene_model
Chromosome: Gm18
Start: 34193978
stop: 34216746
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g29560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10470 AT
Annotation by Michelle Graham. TAIR10: kinesin like protein for actin based chloroplast movement 1 | chr5:3290121-3297248 REVERSE LENGTH=1274
SoyBase E_val: 0 ISS
GO:0000910 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis
SoyBase N/A ISS
GO:0000913 GO-bp
Annotation by Michelle Graham. GO Biological Process: preprophase band assembly
SoyBase N/A ISS
GO:0007018 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule-based movement
SoyBase N/A ISS
GO:0009903 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement
SoyBase N/A ISS
GO:0009904 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009504 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell plate
SoyBase N/A ISS
GO:0009524 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003777 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008017 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule binding
SoyBase N/A ISS
KOG0239
KOG
Kinesin (KAR3 subfamily)
JGI ISS
PTHR24115 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24115:SF244 Panther
JGI ISS
PF00225 PFAM
Kinesin motor domain
JGI ISS
UniRef100_I1N1V7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N1V7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LX99-2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Geminivirus Rep-interacting motor protein n=1 Tax=Arabidopsis thaliana RepID=Q9LX99-2
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g29560
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g29560
Paralog Evidence Comments
Glyma08g38301 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g29560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g146600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g29560
Coding sequences of Glyma18g29560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g29560.1 sequence type=CDS gene model=Glyma18g29560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTGATGAGCGGAGCTCAAGGTGTCTTGACAAGGACTCTAGCCCGATCAAGCCTTTGCAAATCTTCCACCTCTTCATCTATCTTGACCACATCTACACTTTTTGCAATTTTCTTAATGCTTTCCATATCCCAAGCATGTATTGGGATGCCCCAACACATGATCCAGACCAGTCTAAAGCCGATCAAGTTGCCCTTGAAACTGAAGCAAGAATATCTCCATTGATCAATGAGAAAAGAAGATTATTCAATGATTTATTAACATCTAAAGGAAACATACGAGTATTCTGCCGTACAAGGCCATTATTTGAGGATGAAGGTCCTTCAGTTGTTGAATTTCCTGATGATTATACCATTCGTGTAAATACTGGTGATGAATCCTTGTCTAATGCCAAGAAAGATTTTGAATTTGACCGAGTTTATGGACCTCATGTTGGTCAAGCTGAGTTATTCTGTGATGTTCAACCTCTAGTGCAGTCAGCTTTGGATGGATATAATGTTTCCATATTTGCTTTTGGACAAACCCATTCCGGAAAGACACACACTATGGAAGGATCAAGCTATGATCGGGGTTTATATGCTCGTTGTTTTGAGGAGTTGTTTGATTTAGCCAATTTAGATGCAACATCTACTTCTCGATATAAATTCTGTGTTACAGTTTGTGAGCTATATAACGAACAGACAAGGGATCTACTTTTGGAGGCAGGGAAAAGCGCGCCTAAACTCTGCTTGGGATCACCTGAATGTTTCATTGAACTGGTGCAGGAAAACGTTGATAACCCTCTTGAGTTTTCTGAAGTTTTAAAAACTTCATTGCAGACTCGGGAAAATGATTTATCAAACAATAACGTATCTCATTTGATTGTCACGATACATGTATTTTATAACAATTTGATCACTGGTGAAAACTCCTATAGTAAACTCTCTCTGGTTGATTTAGCTGGAAGTGAAGGTTTGATAACAGAAGATGATAGTGGGGACCGTGTCACAGATTTGCTGCATGTTATGAAGTCTCTTTCAGCGTTGGGAGATGTTTTATCTTCTTTAACATCAAAGAAAGATATTATTCCTTATGAAAATTCGCTGCTAACAAAACTGCTTGCAGATTCACTTGGTGGGAGTTCAAAAGCTCTGATGATTGTGAATGTGTGTCCAAGTATTTCAAATTTATCTGAGACATTGTCGTCTCTCAATTTCTCTGCTAGAGCTCGAAATTCTACTTTAAGCCTTGGAAACCGAGACACAATTAAAAAGTGGAGAGATGTTGCAAATGATGCGCGAAAGGAGCTGAATGAGAAAGAAAAAGAAATTCATGATCTAAAGCAAGAGGGTCTGAAACTCAAGCAAGCACTTAAAGATGCAAATGATCAGTGCATTCTACTCTTCAATGAAGTGCAGAAAGCATGGAAAGTTTCTTCTGTATTGCAGACCGATTTAAAGTCGGAACATGTTTTGCTGTCAGATAAACACAAGATAGAGAAAGAACAAAATAATCAGCTTAGAAATCAAGTCGCTCAACTTTTACGGTTAGAGCAAGATCAAAAATTGCAGATACAAGAGCAAGATTCAACCATCCAAAGTTTGCAGGCTAAAATTAGAACTCTTGAAACTCAATTCAATGAAGCTATTAAATCTAGTGAATCTAGGTCAACATTTGTCTATGAGACAGAGTCTGCTGATCAATCCAATTCCGGACCAACTGGTGATGGCATAGACTCTTCTGCAGTAACCAAAAAACTAGATGAGGAACTCAAGAAACGTGATGCACTGATTGAGAGGTTGCATGAAGAGAATGAGAAATTGTTTGACAGATTAACTCAGAAAGCATCTACAGCTGGATCACCTAAGTTGTCAAGTCCATTAGCTCGTGGATCAGCTAATGTTCAGCCTCGGGATATTGGAAGGAATGGCACCAACAACAATACAAGTTCTCGTTCTATGGGTGTTCTTCCTTCACCTTTGGCCACTGATAAAAATGATGGCACGGTTGCTCTAGTTAAAACTGGCTCTGAAATAGTTAAGACTACCCCTGCTGGTGAATATCTTACTGCTGCCCTGAATGACTTTGATCCAGATCAATATGAAGGGCATGCTGCCATATCTGATGGTGCAAACAAGCTTTTGATGCTGGTTCTGGCTGCTGTCATTAAAGCTGGTGCCTCTAGAGAACATGAGATACTCGCTGAAATTAAGGATTCTGTTTTCTCTTTTATTAGAAAGATGGAACCAAAACGAGTAATGGACACCATGCTTGTTTCCCGTGTTAGAATTCTGTATATAAGATCTTTGCTTGCTAGATCCCCAGAGTTGCAATCAATTAAGGTTTTGCCAGTTGAGTGCTTTCTTGAGAAGACTAATACTGGGCGCAGTAGAAGTTCCAGCCGAGGGAGTAGTCCTGGTAGGTCTCCTGTGTTATATGTTGATGAGCAGATCCAGGGATTTAAAGTAAATCTAAAACCAGAAAAGAAATCCAAATTTTCATCTGTTGTGTTGAAGATACGTGGTATTGATGAGGACATTTGGAGACAGCAAGTAACTGGTGGAAAGCTCAGGGAAATTACTGAGGAGGCCAAAAGTTTTGCAATTGGGAACAGGGCTCTTGCTGCACTCTTTGTACATACACCAGCGGGTGAGCTGCAGCGTCAAATTAGATCCTGGCTTGCAGAGAATTTTGAGTTTCTATCTTTAACGGGAGAAGATGCATCGGGGGGGTCTACTGGTCAGTTGGAACTTCTTTCCACTGCAATTATGGATGGTTGGATGGCCGGACTTGGTGCTGCTCTGCCTCCCCACACTGATGCCCTTGGCCAGCTTTTCTTTGAATATTCAAAACGTGTCTATACTTCTCAACTACAACACTTAAAGGATATTGCTGGTACCTTGGCGACAGAGGAGGCTGAAGATGCAGCACAAGTAGCGAAGCTACGCTCAGCTCTAGAATCAGTTGATCATAAAAGAAGAAAGATTTTGCAACAAATGAAAAGTGATATAGCTTTATTGACATTAGAAAATGGTGGTTCCCCTATTCAAAATCCTTCTACTGCAGCTGAAGATGCACGATTAGCATCTCTTATTTCACTTGATAGCATATTAAAGCAAATCAAGGATATAATAAGGCTTTCTTCCGTGAACATCTTGAGCAAAAGTAAGAAAAAAACGATGCTTACTTCTCTGAATGAATTAACAGAGCAGATGCCTTCGCTTCTTGAAATTGATCATCCATGTGCTCAGAGGCACATTGCAGATGCTCACTACTTGGTTGAGTCAATTCCTGAAGAAGATGACCCCATTCAAGATATTTCTCATGGTCGCAAGCCATCAACAGATCTGGGCTCTGGATCTGAAACTGACGTTGCACAGTGGAATGTACTCCAATTTAATACAGGCTCGTCCTCACCATTTATAATAAAATGTGGTGCAAACTCTAATTCCGAACTAGTCATTAAAGCCGACGCACGAGTTCAGGAACCAAAAGGTAGTGAAATTGTGAGGATTGCCCCTAGACCCTCCGTTTTGGAAAATATGAGCTTGGAGGAAATGAAACAAGTATTTAATGAACTACCCGAGGCTCTAAGCTTGCTTGCTCTAGCAAGGACTGCTGATGGCACTCGGGCACGATATTCTAGATTATACAGGACCTTGGCTACTAAGGTTCCATCGCTTAAGGATTTGGTCGGTGAGCTTGAAAAAGTGGGTGCACTCAAAGATGTGAGAACATGA
Predicted protein sequences of Glyma18g29560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g29560.1 sequence type=predicted peptide gene model=Glyma18g29560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVDERSSRCLDKDSSPIKPLQIFHLFIYLDHIYTFCNFLNAFHIPSMYWDAPTHDPDQSKADQVALETEARISPLINEKRRLFNDLLTSKGNIRVFCRTRPLFEDEGPSVVEFPDDYTIRVNTGDESLSNAKKDFEFDRVYGPHVGQAELFCDVQPLVQSALDGYNVSIFAFGQTHSGKTHTMEGSSYDRGLYARCFEELFDLANLDATSTSRYKFCVTVCELYNEQTRDLLLEAGKSAPKLCLGSPECFIELVQENVDNPLEFSEVLKTSLQTRENDLSNNNVSHLIVTIHVFYNNLITGENSYSKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSLLTKLLADSLGGSSKALMIVNVCPSISNLSETLSSLNFSARARNSTLSLGNRDTIKKWRDVANDARKELNEKEKEIHDLKQEGLKLKQALKDANDQCILLFNEVQKAWKVSSVLQTDLKSEHVLLSDKHKIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQFNEAIKSSESRSTFVYETESADQSNSGPTGDGIDSSAVTKKLDEELKKRDALIERLHEENEKLFDRLTQKASTAGSPKLSSPLARGSANVQPRDIGRNGTNNNTSSRSMGVLPSPLATDKNDGTVALVKTGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIKDSVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKTNTGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQVTGGKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAENFEFLSLTGEDASGGSTGQLELLSTAIMDGWMAGLGAALPPHTDALGQLFFEYSKRVYTSQLQHLKDIAGTLATEEAEDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGSPIQNPSTAAEDARLASLISLDSILKQIKDIIRLSSVNILSKSKKKTMLTSLNELTEQMPSLLEIDHPCAQRHIADAHYLVESIPEEDDPIQDISHGRKPSTDLGSGSETDVAQWNVLQFNTGSSSPFIIKCGANSNSELVIKADARVQEPKGSEIVRIAPRPSVLENMSLEEMKQVFNELPEALSLLALARTADGTRARYSRLYRTLATKVPSLKDLVGELEKVGALKDVRT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
