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Report for Sequence Feature Glyma18g29500

Feature Type:gene_model
Chromosome:Gm18
Start:34104059
stop:34112471
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g29500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27990AT Annotation by Michelle Graham. TAIR10: Pre-rRNA-processing protein TSR2, conserved region | chr5:10017358-10018265 FORWARD LENGTH=184 SoyBaseE_val: 3.00E-29ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4032 KOG Uncharacterized conserved protein JGI ISS
PTHR21250Panther UNCHARACTERIZED JGI ISS
PF10273PFAM Pre-rRNA-processing protein TSR2 JGI ISS
UniRef100_G7LJ82UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-rRNA-processing protein TSR2-like protein n=1 Tax=Medicago truncatula RepID=G7LJ82_MEDTR SoyBaseE_val: 3.00E-64ISS
UniRef100_I1N1V4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1V4_SOYBN SoyBaseE_val: 2.00E-143ISS

Expression Patterns of Glyma18g29500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g29500
ParalogEvidenceComments
Glyma08g38260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g29500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g147100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g29500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g29500
>Glyma18g29500.1   sequence type=CDS   gene model=Glyma18g29500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTTCGCGACGGCTACGGGGACATTCTATAGGAGTTTTCAGTGAAGGGATTGGTTTAGTTTTATTTCGCTGGTCGACTCTTCTAACGGCTGTTGAGAATGAATGGGGTGGCCACGAGTCCCGTGTCAAAGCCGATCAACTTGCCAGTGACATTCTTTCCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTGGAGGATGGCAGCATTGAAGAGGTAGCTGAAAAACTAATGGTTATGCACGAAGAATTCTTAGAAGACAATTTTAGTTCTTTCGAAAATCTCAGGAAAGCCAATCTTGAGCATGCTGCTCGTCCTCCTGTACCACAGATTGTAAATGATGATGAAGACGATACAGATGAAGATGTTGGTAATGATGAAAACATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGACTTCAACATCTGTTGCAAACACGAATTCAGTGAACAGGTCAGTTAATGGACCTCTGCCAAAGGTTTCAGGTGAAGCAGATGATGGATGGGTTGTAGTTTCAAACAGAAGAAATAAGGGTAGAAAAAATTAG
Predicted protein sequences of Glyma18g29500
>Glyma18g29500.1   sequence type=predicted peptide   gene model=Glyma18g29500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSRRLRGHSIGVFSEGIGLVLFRWSTLLTAVENEWGGHESRVKADQLASDILSWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSIEEVAEKLMVMHEEFLEDNFSSFENLRKANLEHAARPPVPQIVNDDEDDTDEDVGNDENMIVDDNSSNMNPETSTSVANTNSVNRSVNGPLPKVSGEADDGWVVVSNRRNKGRKN*






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