Glyma18g29480 - SoyBase

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Report for Sequence Feature Glyma18g29480

Feature Type:	gene_model
Chromosome:	Gm18
Start:	33997517
stop:	34003532
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g29480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22560	AT	Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein \| chr2:9585892-9588838 FORWARD LENGTH=947	SoyBase	E_val: 4.00E-141	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07765	PFAM	KIP1-like protein	JGI		ISS
UniRef100_G7JWE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase interacting protein n=1 Tax=Medicago truncatula RepID=G7JWE2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N1V2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1V2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g29480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g29480

Paralog	Evidence	Comments
Glyma08g38220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g29480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g147300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g29480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g29480

Limit To All Plant Sequences

>Glyma18g29480.2   sequence type=CDS   gene model=Glyma18g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTACAGAGAATTGCAAGCAATGCATATTCATGGTGGTGGGCTAGCCATATCAGAACAAAGCAATCAAAATGGATGGAACAAAACCTCCAAGATATGGAGGAAAAGGTGCACACTGTTTTAAAGCTCCTAGAGGAAGAGGGAGACTCATTTGCCAAGAGAGCAGAAATGTATTACAAAAGGAGACTAGAGCTGATAAACTTTGTGGAAGAATCATTTAGGGCATACCATTCTTTAGCTGATAGGTATGATCACATATCAACTGAGTTGCAAAATGCCAACAACACCATTGCTTCTGTGTGCCCAGATCAAGTCCCTTATATGGATGATGATGACCAGGATTCACATAGGGCGAAAACCCCAATAAAAATGCCAGAAGGGTACAAACCAAATATTCCAAAGGTTCTAAAGCCTCCACTTAGAGATTTAAAAAGTGTCATAACAGCCACAAAGAAACTCAATCCCAAGAAGGTAGCATCCACAGCTGGAGCTAATAAAGTTCAAAAATCTGGATTGAGCAGAAAGGAGGCGCTTACAGAGGTTGACAAGCTGCATATAGAGATTCTGGAATTACAAACTGCGAAAGAGTTTGTGAAGAGTACTTATGATAATGCTATTACCAGGCACTGGGATACTGAGCAGCAGATCCAAGGATTACAAGAGAAAGTGTCCAATTTGCAAGATGAACTTGGAGAAGGTGTTGTTATGGATGACGAGGAAGCCCGATGTTTGATGGCCGCAGCGGCTCTTAAGTCATGCCAAGAGACATTATTGCAGTTGGAACTGAAACAGGCTATTTCACTTGATGAGACCAAAATTGAGACCAAAAGGGTAACGGAAGCAAGGGAAAAGTTAATTTCTCTCATGAATGAGTTCCATTATGATCAAACTAATTCCAAAGATCCAAGGGCCAAAAGAGGTGTAAAAGAAATAGCTGGAACCAAGGACTTGGATGATGTATCATATTCAACTCTAACTGTGAAAGATATGGCGGAAAAGATTGATTCACTTGTGAACAAAGTTATCAGCTTAGAAACTACAGTTTCTTCTCAGACAGCTCTTGTAAAGAGATTAAAAGTAGAAACTGATGAACTTCATACCGTGGTTCAAACTCTAGAAGGTGATAAGGAAGGCTTTATCAATGATAAAGCTAAATTGAAGGAGCAATTGAGAGAAATGGATGATAAGCTGTGTGAGGTACAGGATCTAAACCAAATTGTTGAAGACCAGAATACTAACCTCCAAACCCATTTCTCTGAAGCACATTGTAATCTTGATCATTTCTCGGAGAAAGTCCAAAAGGTGAAGCCAAATTTGGTCGGGGAAATATCACTAATGGAAAGAAACTCATCAAGAGAAGATGAATCTGAACATGATCCCAAAGGACAAGATGCATTGAATCAAGACAATGCCTTATTGAATGATGAAAAGTCCAATGAAGAGCATAAGGTCAATGTAGCTCTAAAAGATACTGTAAATTTAAATAAGGAGCTTAAGGTTGCAGAAGTGGCAAAAGACGGCAAGAAAAATCAACATACCCTCTTTGAGTCATCTTTGCAATTGAAAGAACTGAAGACTACTAATGCCTTGAAAGATGAAGAAATTAGACTCCTACATCAGAAACTAGGCGTCCTGCAGAAAAGCTTGAAGGGAATGGAGGATTTGGGAGAGTTAACTTTAGTGCAGCTGGCACCACTGGAGCAACATGACATTGAGGAATTTTTAAAAGTTGAAGAACTTGAATGTACAACATTAGCCATTGAAGAGAAGTTATGGATGAGCATTGATGAACTTCTAGAGGAGAACCTAGACTTCTGGACGAAATTCAAGATAACTATGGCACTGAAAGCCAGTGCTGAAGATGATGACTTCAAGTTCACCAGCTATCAAGCAGCCAAGTTCCAAGATGAGGTTTTGAACATGAAATCTTCAGATTCCCAGAACTCGGTTCCTCTCAAGTCATTCATCTTTGGTGTCAAAACAAAGAAGCAAAAACAATCAATCTTCTCCTGCATGACCCCTGGAATGCAAAGGAAATACCGTGGTTTTAGAGGATAA

Predicted protein sequences of Glyma18g29480

Limit To All Plant Sequences

>Glyma18g29480.2   sequence type=predicted peptide   gene model=Glyma18g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQRIASNAYSWWWASHIRTKQSKWMEQNLQDMEEKVHTVLKLLEEEGDSFAKRAEMYYKRRLELINFVEESFRAYHSLADRYDHISTELQNANNTIASVCPDQVPYMDDDDQDSHRAKTPIKMPEGYKPNIPKVLKPPLRDLKSVITATKKLNPKKVASTAGANKVQKSGLSRKEALTEVDKLHIEILELQTAKEFVKSTYDNAITRHWDTEQQIQGLQEKVSNLQDELGEGVVMDDEEARCLMAAAALKSCQETLLQLELKQAISLDETKIETKRVTEAREKLISLMNEFHYDQTNSKDPRAKRGVKEIAGTKDLDDVSYSTLTVKDMAEKIDSLVNKVISLETTVSSQTALVKRLKVETDELHTVVQTLEGDKEGFINDKAKLKEQLREMDDKLCEVQDLNQIVEDQNTNLQTHFSEAHCNLDHFSEKVQKVKPNLVGEISLMERNSSREDESEHDPKGQDALNQDNALLNDEKSNEEHKVNVALKDTVNLNKELKVAEVAKDGKKNQHTLFESSLQLKELKTTNALKDEEIRLLHQKLGVLQKSLKGMEDLGELTLVQLAPLEQHDIEEFLKVEELECTTLAIEEKLWMSIDELLEENLDFWTKFKITMALKASAEDDDFKFTSYQAAKFQDEVLNMKSSDSQNSVPLKSFIFGVKTKKQKQSIFSCMTPGMQRKYRGFRG*

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