Report for Sequence Feature Glyma18g29440
Feature Type: gene_model
Chromosome: Gm18
Start: 33782432
stop: 33790441
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g29440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38050 AT
Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein | chr4:17869529-17872461 REVERSE LENGTH=709
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0022857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity
SoyBase N/A ISS
KOG1292
KOG
Xanthine/uracil transporters
JGI ISS
PTHR11119 Panther
PURINE PERMEASE
JGI ISS
PTHR11119:SF8 Panther
SODIUM-DEPENDENT VITAMIN C TRANSPORTER
JGI ISS
PF00860 PFAM
Permease family
JGI ISS
UniRef100_G7JWD8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase-ascorbate transporter n=1 Tax=Medicago truncatula RepID=G7JWD8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F0DE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F0DE related cluster n=1 Tax=unknown RepID=UPI000233F0DE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g29440
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g29440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g147700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g29440
Coding sequences of Glyma18g29440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g29440.1 sequence type=CDS gene model=Glyma18g29440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAACCGGGTCGAGTTCGGAGTTCTTAGATAGGGGAAAGGCTATGAGGGATGGCACTGGCAAGAGACATGATGTTAGTGATGCAAAAGTTGAGCCCTTTGTGCCAAGAAGTGATCACAATCCTAAAGAGTTGAAGTCATGGGCAAAGAGAACTGGGTTTGTGTCTGATTACTCTGGGGAAGCTGGGACTAGTGCTAATGAGAATTTTGATAGTGTTGGGTTTGATGTGAAGAGTGTTGATGATCAGAGAGAAGGAGGGTCCTCTCCCACGATAGAGATTGATCCGGTGCTGGGGTTGGCAAGGCCTAATCGGGACAATGAGATTGAGCCGGTTTTTGTGTCCAAGCATCGAGTCATAAGGGGTGAGAATGATAGAGTTTTGAGGTCAAAGGATGTGTGGAATGGAGCAGTGGGGAGCCAAAACCAGAGAAGGAAAATTGGGGATGAGCCTGGTTTGGCTTTGGCTGGTGATGGTGACAAGAAAGTTGGGTTAAGAGGGAATGGTGATGCTAATGGAATGACGGTGAGCACGAATCATGATAGTAATAGCCATGGAGTTTCTGCGGTTGCTCCTTTGCCAGAGCAGAAGAAGGAAGAGGAAGGGGTAGCTGAAGGAGATGTTAAGGTGAATCTGTTTCCGGAGGGGGAGGAATCTTCTGGAAGAGAGTGGCAGGGATCATCTGGATTGAAGTACAGTATCACAGAAAATCCGGGTCTTGTACCTCTTATCTATTACGGCCTGCAGCACTACCTATCATTGGTTGGCTCGCTAGTATTAATCCCATTAATCATGGTACCAACCATGGGTGGAACAGATAACGATACTGCTAATGTAATTTCGACAATGCTGTTTCTTTCTGGCATCACAACGATACTGCATTCCTACTTTGGCACCCGACTACCTTTAGTTCAAGGGAGCTCATTTGTGTATTTGGCACCGGCATTGGTTATCATAAATGCTGAAGAATTTCGAAATCTTACACATCACAAATTTAGGCACATAATGAGGGAACTCCAGGGAGCTATAATTGTTGGCTCAATATTCCAATGTATCCTGGGACTTAGTGGTTTGATGTCTCTTCTTCTCAGGATAATCAACCCAATTGTGGTGGCTCCAACTGTTGCTGCTGTAGGTTTAGCATTCTTCAGCTACGGCTTTCCACAAGCTGGAACATGCATAGAAATTAGCATTCCGCAGATAGCATTAGTTCTATTATTCACACTGCATCTTCGAGGAATATCTATTTTTGGACACCACACATTTCGAATTTATGCTGTTCCCTTGAGTGTTACATTAACTTGGATATATGCGTCCTTTTTAACAGCTGGGGGAGCTTATAACTACAAAGGATGCAATCCCAATATCCCAAGTTCAAACATTTTGACTGATGCATGCAGAAAGCATGCTTATACCATGAAACATTGCAGGACTGATATATCCAACGCACTGTTAACTTCTGCATGGCTCAGAATTCCTTACCCTTTACAGTGGGGTTTTCCTATTTTCCATTTTAGGACTTGCATAATCATGACCGTAGTGTCGCTGGTTGCCTCTGTGGATTCAGTTGGAACTTATCATTCTGCATCACTGCAAGTCAATTTGAGGCCTCCAACTCCAGGAGTTGTGAGCCGAGGAATTGCATTGGAGGGTTTCTGTAGTATATTGGCTGGTCTTTGGGGTTCCGGAACTGGATCAACCACCTTGACAGAAAATGTTCACACAATTGACACAACAAAGGTGGCAAGTCGGAGGGTGGTGGAACTTGGAGCAGCTTTCATGATTCTCTTCTCCTTTATGGGAAAAGTGGGTGCTCTTATTGCTTCCATTCCACAGGGCTTGGCTGCTTCTGTACTGTGTTTCATTTGGGCTCTTATAGCAGCTTTGGGCCTTTCAAACTTACAGTATGGTCAATGTACCAGCTTCAGGAACATGACAATAGTTGGTGTTTCGTTTTTCCTTGGTCTATCAATCCCTGCCTATTTTCAACAATACAAGCCTCAAACCAGTCTGATACTGCCTGCTTACCTGGTACCTTATGGGGCTGCATCTAGTGGACCATTCCATTCTGGCAATAAACAACTTGATTTTGCAATCAATGCTCTTATGTCCTTAAACATGGTGATTACACTTTTGGTGGCATTCATACTGGACAACACTGTCCCGGGAAGTAAACAAGAACGAGGGGTGTATATATGGTCACGAGCTGAAGATATTGCAACTGATCCTTCTCTGCAATCCGCATATTCTTTGCCAAAGAAAATTGCTAGGTGTTTCCGTTGGGCGAAATGTTTGGGAGTCTGA
Predicted protein sequences of Glyma18g29440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g29440.1 sequence type=predicted peptide gene model=Glyma18g29440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METGSSSEFLDRGKAMRDGTGKRHDVSDAKVEPFVPRSDHNPKELKSWAKRTGFVSDYSGEAGTSANENFDSVGFDVKSVDDQREGGSSPTIEIDPVLGLARPNRDNEIEPVFVSKHRVIRGENDRVLRSKDVWNGAVGSQNQRRKIGDEPGLALAGDGDKKVGLRGNGDANGMTVSTNHDSNSHGVSAVAPLPEQKKEEEGVAEGDVKVNLFPEGEESSGREWQGSSGLKYSITENPGLVPLIYYGLQHYLSLVGSLVLIPLIMVPTMGGTDNDTANVISTMLFLSGITTILHSYFGTRLPLVQGSSFVYLAPALVIINAEEFRNLTHHKFRHIMRELQGAIIVGSIFQCILGLSGLMSLLLRIINPIVVAPTVAAVGLAFFSYGFPQAGTCIEISIPQIALVLLFTLHLRGISIFGHHTFRIYAVPLSVTLTWIYASFLTAGGAYNYKGCNPNIPSSNILTDACRKHAYTMKHCRTDISNALLTSAWLRIPYPLQWGFPIFHFRTCIIMTVVSLVASVDSVGTYHSASLQVNLRPPTPGVVSRGIALEGFCSILAGLWGSGTGSTTLTENVHTIDTTKVASRRVVELGAAFMILFSFMGKVGALIASIPQGLAASVLCFIWALIAALGLSNLQYGQCTSFRNMTIVGVSFFLGLSIPAYFQQYKPQTSLILPAYLVPYGAASSGPFHSGNKQLDFAINALMSLNMVITLLVAFILDNTVPGSKQERGVYIWSRAEDIATDPSLQSAYSLPKKIARCFRWAKCLGV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
