Glyma18g29400 - SoyBase

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Report for Sequence Feature Glyma18g29400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	33689388
stop:	33696788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g29400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51190	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr1:18977517-18980305 FORWARD LENGTH=568	SoyBase	E_val: 5.00E-123	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0019827	GO-bp	Annotation by Michelle Graham. GO Biological Process: stem cell maintenance	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9HFM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HFM2_POPTR	SoyBase	E_val: 6.00E-141	ISS
UniRef100_UPI000233F0DC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F0DC related cluster n=1 Tax=unknown RepID=UPI000233F0DC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g29400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g29400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g148000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g29400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g29400

Limit To All Plant Sequences

>Glyma18g29400.3   sequence type=transcript   gene model=Glyma18g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGCAGAGGGAATGATTTTAGTTCATATTTGAAGTAAGCGAATTAAGCTTTATTTGATACTTGGCTACTCTTTGTGTCATAGAAACATGCTTTCACCTAGTACGCAAAAAGGGTCAAGGCTACGATGGACAAGCCTTTAACTTAGTTCATGATGAACAAATTTTCTTAACCGTTAGATTCATCTGATCCTTACGGTTGTAATCTATGCTCACCACACGAGATCTTTTTCCTTCCCATCCCTTTCACTTTCCATCCTCCACCGGTCTACACCGTTTACTCTCCTTTCCTCTTTTCCATTGTCATCATCACCGCCACAACGACCTTGGTTTCGTGGCAACCACCGCCATCACCTATTACATCCTTTACGGAAAGTGCGTCTCCACCATGGACTTTTTTTGTGAGATCGAAACCCTTGGGGACACAGTCACGCAGAATGAGAATATTGTGCGTCTTGGACTTTGATGGCGGTCGTGCCCTTTGCCAACGACTATCGTATCTCGTCGGAGTCGTATGTTTACATGGCAATAGACTTGTCGCTCCGCCGGAGGCGTTTTACAGAGAAGTTTTGTCAGCAATGAGGTTGAGGATCGTGCCAAGGATACAAAGGAGGACCTCCTTGGTGGCTTTTGGCAGTGCGGAAGGGAAACTGACGGCGGCGACAACGGTGTCGTCGGGGACGAGATTTTCATCTGCGGTGGATGACGATGACGAAACAATTTAAACCTGTGTTCTCGTGGTGGTTGCTTTGTTGGTCCATTAAACTCTTTCTCGAATGCCACTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGAATTGTGGAAATGATCAACTAGCTAATTTTCTGTTCTGCTAACAAATAGAAAGCTAGTTTATGGTGCAATTTAGCTTGACCTGCTTCTGGGTCTGACCCCTCTTTAACCCTTTTGCTGAGAAGAAAGATAGGTTTTTTGCTCGGAAAGTCCGAGTCATAGTAACTGTAGGGAATGGATTATGTAAGTAACTTCTCTAAGTTGAGGAGTATTGAGTTGTGGTTTTTCAAGCTTGAACAAAGCTTTTCTAATTTTGCTTGATAACTTACTGCAGCATAATAAATGCTTACTTTTTTCTTCTCCAACTTGATTGAGATTTTCTTTATTTATATACACA

Coding sequences of Glyma18g29400

Limit To All Plant Sequences

>Glyma18g29400.2   sequence type=CDS   gene model=Glyma18g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGCCACCAAAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAACGCAGTTCGGTCCATACGACATCACCACTCCCTCTCACTGCTTCAACGACAACAACTTTTATGGGTGGGCGAATTCAAAGGGTGTGATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCGAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATTGTTCCTGGGTTCAAAGCGCTCTCTGGGACCAACTCGGTGGATGACTCGGCCCCCAACAAGACGACGACTCGGGTTGCGCCCGCTGAGTTGACTGGTGCTCACTCAGGCGAGTCTTGCAAAGGATCTGCTTTGTCGTTATGCGATGTTGCTGCAAATGGTTCTGATGATAGTAATGATAATAAGGCCATTGTTGCGGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACCTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGCAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGTTATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAAAAGCAACCACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA

>Glyma18g29400.3   sequence type=CDS   gene model=Glyma18g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA

Predicted protein sequences of Glyma18g29400

Limit To All Plant Sequences

>Glyma18g29400.2   sequence type=predicted peptide   gene model=Glyma18g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGATKNWLTFSLTPMETQFGPYDITTPSHCFNDNNFYGWANSKGVMDSQSETQQLAVPKMEDFYFGDHQQDLKAIVPGFKALSGTNSVDDSAPNKTTTRVAPAELTGAHSGESCKGSALSLCDVAANGSDDSNDNKAIVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPKATTNFPISNYTKELEEMKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDVDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY*

>Glyma18g29400.3   sequence type=predicted peptide   gene model=Glyma18g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDVDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY*

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