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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51190 | AT | Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:18977517-18980305 FORWARD LENGTH=568 | SoyBase | E_val: 5.00E-123 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0019827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stem cell maintenance | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF332 | Panther | JGI | ISS | ||
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_B9HFM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HFM2_POPTR | SoyBase | E_val: 6.00E-141 | ISS |
| UniRef100_UPI000233F0DC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F0DC related cluster n=1 Tax=unknown RepID=UPI000233F0DC | SoyBase | E_val: 0 | ISS |
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Glyma18g29400 not represented in the dataset |
Glyma18g29400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g148000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g29400.3 sequence type=transcript gene model=Glyma18g29400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGCAGAGGGAATGATTTTAGTTCATATTTGAAGTAAGCGAATTAAGCTTTATTTGATACTTGGCTACTCTTTGTGTCATAGAAACATGCTTTCACCTAGTACGCAAAAAGGGTCAAGGCTACGATGGACAAGCCTTTAACTTAGTTCATGATGAACAAATTTTCTTAACCGTTAGATTCATCTGATCCTTACGGTTGTAATCTATGCTCACCACACGAGATCTTTTTCCTTCCCATCCCTTTCACTTTCCATCCTCCACCGGTCTACACCGTTTACTCTCCTTTCCTCTTTTCCATTGTCATCATCACCGCCACAACGACCTTGGTTTCGTGGCAACCACCGCCATCACCTATTACATCCTTTACGGAAAGTGCGTCTCCACCATGGACTTTTTTTGTGAGATCGAAACCCTTGGGGACACAGTCACGCAGAATGAGAATATTGTGCGTCTTGGACTTTGATGGCGGTCGTGCCCTTTGCCAACGACTATCGTATCTCGTCGGAGTCGTATGTTTACATGGCAATAGACTTGTCGCTCCGCCGGAGGCGTTTTACAGAGAAGTTTTGTCAGCAATGAGGTTGAGGATCGTGCCAAGGATACAAAGGAGGACCTCCTTGGTGGCTTTTGGCAGTGCGGAAGGGAAACTGACGGCGGCGACAACGGTGTCGTCGGGGACGAGATTTTCATCTGCGGTGGATGACGATGACGAAACAATTTAAACCTGTGTTCTCGTGGTGGTTGCTTTGTTGGTCCATTAAACTCTTTCTCGAATGCCACTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGAATTGTGGAAATGATCAACTAGCTAATTTTCTGTTCTGCTAACAAATAGAAAGCTAGTTTATGGTGCAATTTAGCTTGACCTGCTTCTGGGTCTGACCCCTCTTTAACCCTTTTGCTGAGAAGAAAGATAGGTTTTTTGCTCGGAAAGTCCGAGTCATAGTAACTGTAGGGAATGGATTATGTAAGTAACTTCTCTAAGTTGAGGAGTATTGAGTTGTGGTTTTTCAAGCTTGAACAAAGCTTTTCTAATTTTGCTTGATAACTTACTGCAGCATAATAAATGCTTACTTTTTTCTTCTCCAACTTGATTGAGATTTTCTTTATTTATATACACA
>Glyma18g29400.2 sequence type=CDS gene model=Glyma18g29400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGTGCCACCAAAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAACGCAGTTCGGTCCATACGACATCACCACTCCCTCTCACTGCTTCAACGACAACAACTTTTATGGGTGGGCGAATTCAAAGGGTGTGATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCGAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATTGTTCCTGGGTTCAAAGCGCTCTCTGGGACCAACTCGGTGGATGACTCGGCCCCCAACAAGACGACGACTCGGGTTGCGCCCGCTGAGTTGACTGGTGCTCACTCAGGCGAGTCTTGCAAAGGATCTGCTTTGTCGTTATGCGATGTTGCTGCAAATGGTTCTGATGATAGTAATGATAATAAGGCCATTGTTGCGGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACCTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGCAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGTTATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAAAAGCAACCACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA >Glyma18g29400.3 sequence type=CDS gene model=Glyma18g29400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA
>Glyma18g29400.2 sequence type=predicted peptide gene model=Glyma18g29400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGATKNWLTFSLTPMETQFGPYDITTPSHCFNDNNFYGWANSKGVMDSQSETQQLAVPKMEDFYFGDHQQDLKAIVPGFKALSGTNSVDDSAPNKTTTRVAPAELTGAHSGESCKGSALSLCDVAANGSDDSNDNKAIVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPKATTNFPISNYTKELEEMKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDVDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY* >Glyma18g29400.3 sequence type=predicted peptide gene model=Glyma18g29400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDVDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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